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GEO accession:
Series GSE148474
Query DataSets for GSE148474
Status
Public on Nov 10, 2020
Title
ARID1A mutations promote P300-dependent endometrial invasion through super-enhancer hyperacetylation
Organism
Homo sapiens
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
33176148
,
35326450
Submission date
Apr 10, 2020
Last update date
Mar 31, 2022
Contact name
Ronald L. Chandler
E-mail(s)
rlc@msu.edu
Organization name
Michigan State University
Department
Obstetrics, Gynecology and Reproductive Biology
Street address
3100-4 400 Monroe NW
City
Grand Rapids
State/province
MI
ZIP/Postal code
49503
Country
USA
Platforms (2)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
Samples (65)
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GSM4472092
WT_P300_rep1
GSM4472093
WT_P300_rep2
GSM4472094
WT_P300_Input
GSM4472095
LVshNONtg_P300_rep1
GSM4472096
LVshNONtg_P300_rep2
GSM4472097
LVshNONtg_Input
GSM4472098
LVshARID1A_P300_rep1
GSM4472099
LVshARID1A_P300_rep2
GSM4472100
LVshARID1A_Input
GSM4472101
SimpleChIP_LVshNONtg_H3K18ac_rep1
GSM4472102
SimpleChIP_LVshNONtg_H3K18ac_rep2
GSM4472103
SimpleChIP_LVshNONtg_H3K27ac_rep1
GSM4472104
SimpleChIP_LVshNONtg_H3K27ac_rep2
GSM4472105
SimpleChIP_LVshNONtg_Input
GSM4472106
SimpleChIP_LVshARID1A_H3K18ac_rep1
GSM4472107
SimpleChIP_LVshARID1A_H3K18ac_rep2
GSM4472108
SimpleChIP_LVshARID1A_H3K27ac_rep1
GSM4472109
SimpleChIP_LVshARID1A_H3K27ac_rep2
GSM4472110
SimpleChIP_LVshARID1A_Input_R1.fastq.gz
GSM4472111
siNONtg_vehicle_rep1_RNA
GSM4472112
siNONtg_vehicle_rep2_RNA
GSM4472113
siNONtg_vehicle_rep3_RNA
GSM4472114
siNONtg_A485_rep1_RNA
GSM4472115
siNONtg_A485_rep2_RNA
GSM4472116
siNONtg_A485_rep3_RNA
GSM4472117
siP300_vehicle_rep1_RNA
GSM4472118
siP300_vehicle_rep2_RNA
GSM4472119
siP300_vehicle_rep3_RNA
GSM4472120
siARID1A_vehicle_rep1_RNA
GSM4472121
siARID1A_vehicle_rep2_RNA
GSM4472122
siARID1A_vehicle_rep3_RNA
GSM4472123
siARID1A_A485_rep1_RNA
GSM4472124
siARID1A_A485_rep2_RNA
GSM4472125
siARID1A_A485_rep3_RNA
GSM4472126
siARID1A_siP300_vehicle_rep1_RNA
GSM4472127
siARID1A_siP300_vehicle_rep2_RNA
GSM4472128
siARID1A_siP300_vehicle_rep3_RNA
GSM4774097
siNONtg_vehicle_H3K27ac_rep1_CUTNRUN
GSM4774098
siNONtg_vehicle_H3K27ac_rep2_CUTNRUN
GSM4774099
siNONtg_vehicle_IgG_CUTNRUN
GSM4774100
siARID1A_vehicle_H3K27ac_rep1_CUTNRUN
GSM4774101
siARID1A_vehicle_H3K27ac_rep2_CUTNRUN
GSM4774102
siARID1A_vehicle_IgG_CUTNRUN
GSM4774103
siARID1A_siP300_vehicle_H3K27ac_rep1_CUTNRUN
GSM4774104
siARID1A_siP300_vehicle_H3K27ac_rep2_CUTNRUN
GSM4774105
siARID1A_siP300_vehicle_IgG_CUTNRUN
GSM4774106
siARID1A_1uMA485_H3K27ac_rep1_CUTNRUN
GSM4774107
siARID1A_1uMA485_H3K27ac_rep2_CUTNRUN
GSM4774108
siARID1A_1uMA485_IgG_CUTNRUN
GSM4774109
LVshNONtg_H3K4me1_rep1
GSM4774110
LVshNONtg_H3K4me1_rep2
GSM4774111
LVshNONtg_Input
GSM4774112
LVshARID1A_H3K4me1_rep1
GSM4774113
LVshARID1A_H3K4me1_rep2
GSM4774114
LVshARID1A_Input
GSM4774131
LVshNONtg_H3K4me3_rep1
GSM4774132
LVshNONtg_H3K4me3_rep2
GSM4774133
LVshNONtg_H3K27me3_rep1
GSM4774134
LVshNONtg_H3K27me3_rep2
GSM4774135
LVshNONtg_Input_for_H3K4me3&H3K27me3
GSM4774136
LVshARID1A_H3K4me3_rep1
GSM4774137
LVshARID1A_H3K4me3_rep2
GSM4774138
LVshARID1A_H3K27me3_rep1
GSM4774139
LVshARID1A_H3K27me3_rep2
GSM4774140
LVshARID1A_Input_for_H3K4me3&H3K27me3
This SuperSeries is composed of the following SubSeries:
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GSE148470
ARID1A mutations promote P300-dependent endometrial invasion through super-enhancer hyperacetylation (P300_ChIP)
GSE148471
ARID1A mutations promote P300-dependent endometrial invasion through super-enhancer hyperacetylation (diff_P300_ChIP)
GSE148472
ARID1A mutations promote P300-dependent endometrial invasion through super-enhancer hyperacetylation (diff_H3Kac_ChIP)
GSE148473
ARID1A mutations promote P300-dependent endometrial invasion through super-enhancer hyperacetylation (RNA)
GSE157731
ARID1A mutations promote P300-dependent endometrial invasion through super-enhancer hyperacetylation (diff_H3K27ac_CUTNRUN)
GSE157732
ARID1A mutations promote P300-dependent endometrial invasion through super-enhancer hyperacetylation (diff_H3K4me1_ChIP)
GSE157735
ARID1A mutations promote P300-dependent endometrial invasion through super-enhancer hyperacetylation (diff_H3K4me3_H3K27me3_ChIP)
Relations
BioProject
PRJNA624329
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE148474_RAW.tar
75.7 Mb
(http)
(custom)
TAR (of BROADPEAK, NARROWPEAK, TAB)
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