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GEO accession:
Series GSE190557
Query DataSets for GSE190557
Status
Public on Sep 06, 2022
Title
ARID1A-dependent maintenance of H3.3 is required for repressive CHD4-ZMYND8 chromatin interactions at super-enhancers
Organism
Homo sapiens
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
36153585
Submission date
Dec 09, 2021
Last update date
Sep 29, 2022
Contact name
Ronald L. Chandler
E-mail(s)
rlc@msu.edu
Organization name
Michigan State University
Department
Obstetrics, Gynecology and Reproductive Biology
Street address
3100-4 400 Monroe NW
City
Grand Rapids
State/province
MI
ZIP/Postal code
49503
Country
USA
Platforms (1)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
Samples (69)
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GSM5725636
12Z_CHD4_rep1_ChIP
GSM5725637
12Z_CHD4_rep2_ChIP
GSM5725638
12Z_ChIP_Input [re-analyzed]
GSM5725639
12Z_Control_H2A.Z_rep1_ChIP
GSM5725640
12Z_Control_H2A.Z_rep2_ChIP
GSM5725641
12Z_Control_panH4ac_rep1_ChIP
GSM5725642
12Z_Control_panH4ac_rep2_ChIP
GSM5725643
12Z_shARID1A_H2A.Z_rep1_ChIP
GSM5725644
12Z_shARID1A_H2A.Z_rep2_ChIP
GSM5725645
12Z_shARID1A_panH4ac_rep1_ChIP
GSM5725646
12Z_shARID1A_panH4ac_rep2_ChIP
GSM5725647
SimpleChIP_LVshNONtg_Input [re-analyzed]
GSM5725648
SimpleChIP_LVshARID1A_Input_R1.fastq.gz [re-analyzed]
GSM5725649
12Z_Control_H3.3_rep1_ChIP
GSM5725650
12Z_Control_H3.3_rep2_ChIP
GSM5725651
12Z_Control_H2A.Zac_rep1_ChIP
GSM5725652
12Z_Control_H2A.Zac_rep2_ChIP
GSM5725653
12Z_shARID1A_H3.3_rep1_ChIP
GSM5725654
12Z_shARID1A_H3.3_rep2_ChIP
GSM5725655
12Z_shARID1A_H2A.Zac_rep1_ChIP
GSM5725656
12Z_shARID1A_H2A.Zac_rep2_ChIP
GSM5725657
12Z_Control_Input_1
GSM5725658
12Z_shARID1A_Input_1
GSM5725659
12Z_Control_H4K16ac_rep1_ChIP
GSM5725660
12Z_Control_H4K16ac_rep2_ChIP
GSM5725661
12Z_shARID1A_H4K16ac_rep1_ChIP
GSM5725662
12Z_shARID1A_H4K16ac_rep2_ChIP
GSM5725663
12Z_Control_Input_2
GSM5725664
12Z_shARID1A_Input_2
GSM5725665
12Z_Control_non-targeting shRNA_H3.3_rep2_ChIP
GSM5725666
12Z_Control_non-targeting shRNA_H3.3_rep1_ChIP
GSM5725667
12Z_shCHD4_H3.3_rep1_ChIP
GSM5725668
12Z_shCHD4_H3.3_rep2_ChIP
GSM5725669
12Z_Control_Input_3
GSM5725670
12Z_shCHD4_Input_3
GSM5725671
12Z_ZMYND8_rep1_ChIP
GSM5725672
12Z_ZMYND8_rep2_ChIP
GSM5725673
12Z_Control_Input_4
GSM5725674
12Z_Control_non-targeting siRNA_rep1_RNA
GSM5725675
12Z_Control_non-targeting siRNA_rep2_RNA
GSM5725676
12Z_Control_non-targeting siRNA_rep3_RNA
GSM5725677
12Z_siCHD4_rep1_RNA
GSM5725678
12Z_siCHD4_rep2_RNA
GSM5725679
12Z_siCHD4_rep3_RNA
GSM5725680
12Z_siARID1A_rep1_RNA
GSM5725681
12Z_siARID1A_rep2_RNA
GSM5725682
12Z_siARID1A_rep3_RNA
GSM5725683
12Z_siCHD4siARID1A_rep1_RNA
GSM5725684
12Z_siCHD4siARID1A_rep2_RNA
GSM5725685
12Z_siCHD4siARID1A_rep3_RNA
GSM5725686
12Z_Control_rep1_RNA
GSM5725687
12Z_Control_rep2_RNA
GSM5725688
12Z_Control_rep3_RNA
GSM5725689
12Z_siH3F3B_rep1_RNA
GSM5725690
12Z_siH3F3B_rep2_RNA
GSM5725691
12Z_siH3F3B_rep3_RNA
GSM5725692
12Z_siZMYND8_rep1_RNA
GSM5725693
12Z_siZMYND8_rep2_RNA
GSM5725694
12Z_siZMYND8_rep3_RNA
GSM6423437
12Z_Control_CHD4_rep1_ChIP
GSM6423438
12Z_Control_CHD4_rep2_ChIP
GSM6423439
12Z_Control_H3.1_rep1_ChIP
GSM6423440
12Z_Control_H3.1_rep2_ChIP
GSM6423441
12Z_Control_Input
GSM6423442
12Z_shARID1A_CHD4_rep1_ChIP
GSM6423443
12Z_shARID1A_CHD4_rep2_ChIP
GSM6423444
12Z_shARID1A_H3.1_rep1_ChIP
GSM6423445
12Z_shARID1A_H3.1_rep2_ChIP
GSM6423446
12Z_shARID1A_Input
This SuperSeries is composed of the following SubSeries:
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GSE190549
ARID1A-dependent maintenance of H3.3 is required for repressive CHD4-ZMYND8 chromatin interactions at super-enhancers [12Z_CHD4_ChIP]
GSE190550
ARID1A-dependent maintenance of H3.3 is required for repressive CHD4-ZMYND8 chromatin interactions at super-enhancers [12Z_shARID1A_H2A.Z_panH4ac_ChIP]
GSE190551
ARID1A-dependent maintenance of H3.3 is required for repressive CHD4-ZMYND8 chromatin interactions at super-enhancers [12Z_shARID1A_H3.3_H2A.Zac_ChIP]
GSE190552
ARID1A-dependent maintenance of H3.3 is required for repressive CHD4-ZMYND8 chromatin interactions at super-enhancers [12Z_shARID1A_H4K16ac_ChIP]
GSE190553
ARID1A-dependent maintenance of H3.3 is required for repressive CHD4-ZMYND8 chromatin interactions at super-enhancers [12Z_shCHD4_H3.3_ChIP]
GSE190554
ARID1A-dependent maintenance of H3.3 is required for repressive CHD4-ZMYND8 chromatin interactions at super-enhancers [12Z_ZMYND8_ChIP]
GSE190555
ARID1A-dependent maintenance of H3.3 is required for repressive CHD4-ZMYND8 chromatin interactions at super-enhancers [12Z_siCHD4_siARID1A_RNA]
GSE190556
ARID1A-dependent maintenance of H3.3 is required for repressive CHD4-ZMYND8 chromatin interactions at super-enhancers [12Z_siH3F3B_siZMYND8_RNA]
GSE210201
ARID1A maintains transcriptionally repressive H3.3 through CHD4-ZMYND8 chromatin interactions [12Z_shARID1A_CHD4_H3.1_ChIP]
Relations
BioProject
PRJNA787541
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File type/resource
GSE190557_RAW.tar
69.1 Mb
(http)
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TAR (of BROADPEAK, NARROWPEAK, TAB)
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