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GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Jun 29, 2023 |
| Title |
A spatially resolved single cell genomic atlas of the adult human breast |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Contributor(s) |
Kumar T, Nee K, Wei R, Kessenbrock K, Navin N |
| Citation(s) |
37380767 |
| Submission date |
Jan 28, 2022 |
| Last update date |
Mar 25, 2024 |
| Contact name |
Nicholas Navin |
| E-mail(s) |
nnavin@mdanderson.org
|
| Phone |
713-563-1287
|
| Organization name |
MD Anderson Cancer Center
|
| Department |
System Biology
|
| Lab |
Navin Lab
|
| Street address |
6767 Bertner Ave
|
| City |
Houston |
| State/province |
TX |
| ZIP/Postal code |
77030 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL20301 |
Illumina HiSeq 4000 (Homo sapiens) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
|
| Samples (201)
|
| GSM7475112 |
P10, replicate_1, contra, frozen tissue OCT, visium |
| GSM7475113 |
P35, replicate_1, contra, frozen tissue OCT, visium |
| GSM7475114 |
P46, replicate_1, left, frozen tissue OCT, visium |
| GSM7475115 |
P47, replicate_1, left, frozen tissue OCT, visium |
| GSM7475116 |
P65, replicate_1, right, frozen tissue OCT, visium |
| GSM7475117 |
P67, replicate_1, right, frozen tissue OCT, visium |
| GSM7475118 |
P127, replicate_1, right, frozen tissue OCT, visium |
| GSM7475119 |
P85, replicate_1, right, frozen tissue OCT, visium |
| GSM7475120 |
P79, replicate_1, left, frozen tissue OCT, visium |
| GSM7475121 |
P82, replicate_1, right, frozen tissue OCT, visium |
| GSM7475145 |
hbca_n01,P01,replicate_1,contra,nuclei |
| GSM7475146 |
hbca_n02,P08,replicate_1,contra,nuclei |
| GSM7475147 |
hbca_n03,P10,replicate_1,contra,nuclei |
| GSM7475148 |
hbca_n04,P37,replicate_1,contra,nuclei |
| GSM7475149 |
hbca_n05,P133,replicate_1,contra,nuclei |
| GSM7475150 |
hbca_n06,P134,replicate_1,left and right breast,nuclei |
| GSM7475151 |
hbca_n07,P12,replicate_1,left and right breast,nuclei |
| GSM7475152 |
hbca_n08,P17,replicate_1,blank,nuclei |
| GSM7475153 |
hbca_n09,P18,replicate_1,left and right breast,nuclei |
| GSM7475154 |
hbca_n10,P19,replicate_1,left and right breast,nuclei |
| GSM7475155 |
hbca_n11,P20,replicate_1,rm,nuclei |
| GSM7475156 |
hbca_n12,P135,replicate_1,rm,nuclei |
| GSM7475157 |
hbca_n13,P22,replicate_1,contra,nuclei |
| GSM7475158 |
hbca_n14,P23,replicate_1,contra,nuclei |
| GSM7475159 |
hbca_n15,P24,replicate_1,right,nuclei |
| GSM7475160 |
hbca_n16,P59,replicate_1,right,nuclei |
| GSM7475161 |
hbca_n17,P38,replicate_1,left,nuclei |
| GSM7475162 |
hbca_n18,P38,replicate_1,right,nuclei |
| GSM7475163 |
hbca_n19,P39,replicate_1,left,nuclei |
| GSM7475164 |
hbca_n20,P39,replicate_1,right,nuclei |
| GSM7475165 |
hbca_n21,P40,replicate_1,left,nuclei |
| GSM7475166 |
hbca_n22,P40,replicate_1,right,nuclei |
| GSM7475167 |
hbca_n23,P41,replicate_1,left,nuclei |
| GSM7475168 |
hbca_n24,P41,replicate_1,right,nuclei |
| GSM7500359 |
hbca_c50,P44,replicate_1,left,overnight_digestion |
| GSM7500360 |
hbca_c51,P44,replicate_1,right,overnight_digestion |
| GSM7500361 |
hbca_c52,P45,replicate_1,right,3hr_digestion |
| GSM7500362 |
hbca_c53,P46,replicate_1,left,2hr_digstion |
| GSM7500363 |
hbca_c54,P46,replicate_1,right,2hr_digstion |
| GSM7500364 |
hbca_c55,P47,replicate_1,left,2hr_digstion |
| GSM7500365 |
hbca_c56,P47,replicate_1,right,2hr_digstion |
| GSM7500366 |
hbca_c57,P48,replicate_1,left,2hr_digstion |
| GSM7500367 |
hbca_c58,P48,replicate_1,right,2hr_digstion |
| GSM7500368 |
hbca_c60,P49,replicate_1,left,4hr_digestion |
| GSM7500369 |
hbca_c61,P49,replicate_1,right,4hr_digestion |
| GSM7500370 |
hbca_c59,P49,replicate_2,right,4hr_digestion |
| GSM7500371 |
hbca_c62,P50,replicate_1,left,3hr_digestion |
| GSM7500372 |
hbca_c63,P50,replicate_2,left,3hr_digestion |
| GSM7500373 |
hbca_c64,P50,replicate_1,right,3hr_digestion |
| GSM7500374 |
hbca_c65,P50,replicate_2,right,3hr_digestion |
| GSM7500375 |
hbca_c67,P51,replicate_1,left,3hr_digestion |
| GSM7500376 |
hbca_c66,P51,replicate_2,left,3hr_digestion |
| GSM7500377 |
hbca_c69,P51,replicate_1,right,3hr_digestion |
| GSM7500378 |
hbca_c68,P51,replicate_2,right,3hr_digestion |
| GSM7500379 |
hbca_c70,P52,replicate_1,left,3hr_digestion |
| GSM7500380 |
hbca_c71,P52,replicate_1,right,3hr_digestion |
| GSM7500381 |
hbca_c72,P53,replicate_1,left,3hr_digestion |
| GSM7500382 |
hbca_c73,P53,replicate_1,right,3hr_digestion |
| GSM7500383 |
hbca_c74,P54,replicate_1,left,3hr_digestion |
| GSM7500384 |
hbca_c75,P54,replicate_1,right,3hr_digestion |
| GSM7500385 |
hbca_c76,P55,replicate_1,left,3hr_digestion |
| GSM7500386 |
hbca_c77,P55,replicate_1,right,3hr_digestion |
| GSM7500387 |
hbca_c78,P56,replicate_1,left,6hr_digestion |
| GSM7500388 |
hbca_c79,P56,replicate_1,right,6hr_digestion |
| GSM7500389 |
hbca_c80,P57,replicate_1,left,3hr_digestion |
| GSM7500390 |
hbca_c81,P57,replicate_1,right,3hr_digestion |
| GSM7500391 |
hbca_c82,P38,replicate_1,left,3hr_digestion |
| GSM7500392 |
hbca_c83,P38,replicate_1,right,3hr_digestion |
| GSM7500393 |
hbca_c84,P39,replicate_1,left,3hr_digestion |
| GSM7500394 |
hbca_c85,P39,replicate_1,right,3hr_digestion |
| GSM7500395 |
hbca_c86,P40,replicate_1,left,3hr_digestion |
| GSM7500396 |
hbca_c87,P40,replicate_1,right,3hr_digestion |
| GSM7500397 |
hbca_c88,P58,replicate_1,left,3hr_digestion |
| GSM7500398 |
hbca_c89,P58,replicate_1,right,3hr_digestion |
| GSM7500399 |
hbca_c90,P41,replicate_1,left,4hr_digestion |
| GSM7500400 |
hbca_c91,P41,replicate_1,right,4hr_digestion |
| GSM7500401 |
hbca_c92,P59,replicate_1,left,3hr_digestion |
| GSM7500402 |
hbca_c100,P59,replicate_2,left,3hr_digestion |
| GSM7500403 |
hbca_c93,P59,replicate_1,right,3hr_digestion |
| GSM7500404 |
hbca_c94,P60,replicate_1,left,3hr_digestion |
| GSM7500405 |
hbca_c95,P60,replicate_1,right,3hr_digestion |
| GSM7500406 |
hbca_c96,P61,replicate_1,left,4hr_digestion |
| GSM7500407 |
hbca_c97,P61,replicate_1,right,4hr_digestion |
| GSM7500408 |
hbca_c98,P62,replicate_1,left,2hr_digstion |
| GSM7500409 |
hbca_c99,P62,replicate_1,right,2hr_digstion |
| GSM7500410 |
hbca_c101,P63,replicate_1,left,3hr_digestion |
| GSM7500411 |
hbca_c102,P63,replicate_1,right,3hr_digestion |
| GSM7500412 |
hbca_c103,P64,replicate_1,left,2hr_digstion |
| GSM7500413 |
hbca_c104,P64,replicate_1,right,2hr_digstion |
| GSM7500414 |
hbca_c105,P65,replicate_1,left,2hr_digstion |
| GSM7500415 |
hbca_c106,P65,replicate_1,right,2hr_digstion |
| GSM7500416 |
hbca_c107,P66,replicate_1,right,3hr_digestion |
| GSM7500417 |
hbca_c108,P67,replicate_1,left,3hr_digestion |
| GSM7500418 |
hbca_c109,P68,replicate_1,left,2hr_digstion |
| GSM7500419 |
hbca_c110,P69,replicate_1,right,2hr_digstion |
| GSM7500420 |
hbca_c111,P70,replicate_1,right,3hr_digestion |
| GSM7500421 |
hbca_c112,P71,replicate_1,left,3hr_digestion |
| GSM7500422 |
hbca_c113,P72,replicate_1,right,2hr_digstion |
| GSM7500423 |
hbca_c114,P73,replicate_1,right,3hr_digestion |
| GSM7500424 |
hbca_c115,P74,replicate_1,right,2hr_digstion |
| GSM7500425 |
hbca_c116,P75,replicate_1,left,3hr_digestion |
| GSM7500426 |
hbca_c117,P76,replicate_1,left,3hr_digestion |
| GSM7500427 |
hbca_c118,P77,replicate_1,left,3hr_digestion |
| GSM7500428 |
hbca_c119,P78,replicate_1,right,2hr_digstion |
| GSM7500429 |
hbca_c120,P79,replicate_1,left,3hr_digestion |
| GSM7500430 |
hbca_c121,P80,replicate_1,right,2hr_digstion |
| GSM7500431 |
hbca_c122,P81,replicate_1,right,2hr_digstion |
| GSM7500432 |
hbca_c123,P82,replicate_1,right,3hr_digestion |
| GSM7500433 |
hbca_c124,P83,replicate_1,right,3hr_digestion |
| GSM7500434 |
hbca_c125,P84,replicate_1,right,2hr_digstion |
| GSM7500435 |
hbca_c126,P85,replicate_1,right,2hr_digstion |
| GSM7500436 |
hbca_c127,P86,replicate_1,right,2hr_digstion |
| GSM7500437 |
hbca_c128,P87,replicate_1,right,3hr_digestion |
| GSM7500438 |
hbca_c129,P88,replicate_1,right,3hr_digestion |
| GSM7500439 |
hbca_c130,P89,replicate_1,right,2hr_digstion |
| GSM7500440 |
hbca_c131,P90,replicate_1,right,3hr_digestion |
| GSM7500441 |
hbca_c132,P91,replicate_1,left,6hr_digestion |
| GSM7500442 |
hbca_c133,P92,replicate_1,right,2hr_digstion |
| GSM7500443 |
hbca_c134,P93,replicate_1,right,2hr_digstion |
| GSM7500444 |
hbca_c135,P94,replicate_1,right,3hr_digestion |
| GSM7500445 |
hbca_c136,P95,replicate_1,left,6hr_digestion |
| GSM7500446 |
hbca_c137,P96,replicate_1,left,2hr_digstion |
| GSM7500447 |
hbca_c138,P97,replicate_1,right,3hr_digestion |
| GSM7500448 |
hbca_c139,P98,replicate_1,left,3hr_digestion |
| GSM7500449 |
hbca_c140,P99,replicate_1,left,3hr_digestion |
| GSM7500450 |
hbca_c141,P100,replicate_1,right,2hr_digstion |
| GSM7500451 |
hbca_c142,P101,replicate_1,right,3hr_digestion |
| GSM7500452 |
hbca_c143,P102,replicate_1,left,2hr_digstion |
| GSM7500453 |
hbca_c144,P103,replicate_1,right,3hr_digestion |
| GSM7500454 |
hbca_c145,P104,replicate_1,right,2hr_digstion |
| GSM7500455 |
hbca_c146,P105,replicate_1,left,3hr_digestion |
| GSM7500456 |
hbca_c147,P106,replicate_1,right,3hr_digestion |
| GSM7500457 |
hbca_c148,P107,replicate_1,right,3hr_digestion |
| GSM7500458 |
hbca_c149,P108,replicate_1,right,3hr_digestion |
| GSM7500459 |
hbca_c150,P109,replicate_1,right,4hr_digestion |
| GSM7500460 |
hbca_c151,P110,replicate_1,left,3hr_digestion |
| GSM7500461 |
hbca_c152,P111,replicate_1,left,3hr_digestion |
| GSM7500462 |
hbca_c153,P112,replicate_1,left,3hr_digestion |
| GSM7500463 |
hbca_c01,P01,replicate_1,contra,short_digestion |
| GSM7500464 |
hbca_c02,P02,replicate_1,contra,short_digestion |
| GSM7500465 |
hbca_c03,P03,replicate_1,contra,short_digestion |
| GSM7500466 |
hbca_c04,P04,replicate_1,contra,short_digestion |
| GSM7500467 |
hbca_c05,P05,replicate_1,contra,short_digestion |
| GSM7500468 |
hbca_c06,P06,replicate_1,contra,short_digestion |
| GSM7500469 |
hbca_c07,P07,replicate_1,contra,short_digestion |
| GSM7500470 |
hbca_c08,P08,replicate_1,contra,short_digestion |
| GSM7500471 |
hbca_c09,P09,replicate_1,contra,short_digestion |
| GSM7500472 |
hbca_c10,P09,replicate_1,contra,overnight_digestion |
| GSM7500473 |
hbca_c11,P10,replicate_1,contra,short_digestion |
| GSM7500474 |
hbca_c12,P11,replicate_1,contra,short_digestion |
| GSM7500475 |
hbca_c13,P11,replicate_1,contra,overnight_digestion |
| GSM7500476 |
hbca_c34,P26,replicate_1,contra,overnight_digestion |
| GSM7500477 |
hbca_c35,P27,replicate_1,contra,short_digestion |
| GSM7500478 |
hbca_c36,P28,replicate_1,contra,overnight_digestion |
| GSM7500479 |
hbca_c37,P29,replicate_1,contra,overnight_digestion |
| GSM7500480 |
hbca_c38,P30,replicate_1,right,overnight_digestion |
| GSM7500481 |
hbca_c39,P31,replicate_1,left,overnight_digestion |
| GSM7500482 |
hbca_c33,P25,replicate_1,contra,overnight_digestion |
| GSM7500483 |
hbca_c40,P37,replicate_1,contra,short_digestion |
| GSM7500484 |
hbca_c25,P20,replicate_1,NA,short_digestion |
| GSM7500485 |
hbca_c26,P20,replicate_1,NA,overnight_digestion |
| GSM7500486 |
hbca_c41,P32,replicate_1,contra,overnight_digestion |
| GSM7500487 |
hbca_c42,P33,replicate_1,contra,overnight_digestion |
| GSM7500488 |
hbca_c43,P34,replicate_1,contra,overnight_digestion |
| GSM7500489 |
hbca_c27,P21,replicate_1,contra,overnight_digestion |
| GSM7500490 |
hbca_c28,P22,replicate_1,contra,short_digestion |
| GSM7500491 |
hbca_c29,P23,replicate_1,contra,short_digestion |
| GSM7500492 |
hbca_c30,P23,replicate_2,contra,short_digestion |
| GSM7500493 |
hbca_c31,P24,replicate_1,NA,6hr_digestion |
| GSM7500494 |
hbca_c32,P24,replicate_1,NA,overnight_digestion |
| GSM7500495 |
hbca_c44,P35,replicate_1,contra,overnight_digestion |
| GSM7500496 |
hbca_c45,P36,replicate_1,contra,overnight_digestion |
| GSM7500497 |
hbca_c46,P42,replicate_1,contra,short_digestion |
| GSM7500498 |
hbca_c47,P43,replicate_1,contra,short_digestion |
| GSM7500499 |
hbca_c48,P43,replicate_1,contra,3hr_digestion |
| GSM7500500 |
hbca_c49,P43,replicate_1,contra,overnight_digestion |
| GSM7500501 |
hbca_c18,P14,replicate_1,both,overnight_digestion |
| GSM7500502 |
hbca_c16,P13,replicate_1,both,overnight_digestion |
| GSM7500503 |
hbca_c17,P13,replicate_2,both,overnight_digestion |
| GSM7500504 |
hbca_c21,P17,replicate_1,both,overnight_digestion |
| GSM7500505 |
hbca_c20,P16,replicate_1,both,overnight_digestion |
| GSM7500506 |
hbca_c14,P12,replicate_1,both,overnight_digestion |
| GSM7500507 |
hbca_c15,P12,replicate_2,both,overnight_digestion |
| GSM7500508 |
hbca_c22,P18,replicate_1,both,overnight_digestion |
| GSM7500509 |
hbca_c23,P18,replicate_2,both,overnight_digestion |
| GSM7500510 |
hbca_c24,P19,replicate_1,both,overnight_digestion |
| GSM7500511 |
hbca_c19,P15,replicate_1,both,overnight_digestion |
| GSM7500512 |
hbca_c165,P124,replicate_1,contra,3hr_digestion |
| GSM7500513 |
hbca_c154,P113,replicate_1,contra,3hr_digestion |
| GSM7500514 |
hbca_c166,P125,replicate_1,contra,3hr_digestion |
| GSM7500515 |
hbca_c158,P117,replicate_1,contra,3hr_digestion |
| GSM7500516 |
hbca_c163,P122,replicate_1,contra,3hr_digestion |
| GSM7500517 |
hbca_c159,P118,replicate_1,contra,3hr_digestion |
| GSM7500518 |
hbca_c155,P114,replicate_1,contra,3hr_digestion |
| GSM7500519 |
hbca_c161,P120,replicate_1,contra,3hr_digestion |
| GSM7500520 |
hbca_c164,P123,replicate_1,contra,3hr_digestion |
| GSM7500521 |
hbca_c167,P126,replicate_1,contra,3hr_digestion |
| GSM7500522 |
hbca_c157,P116,replicate_1,contra,3hr_digestion |
| GSM7500523 |
hbca_c160,P119,replicate_1,contra,3hr_digestion |
| GSM7500524 |
hbca_c156,P115,replicate_1,contra,3hr_digestion |
| GSM7500525 |
hbca_c162,P121,replicate_1,contra,3hr_digestion |
|
| This SuperSeries is composed of the following SubSeries: |
| GSE234814 |
A spatially resolved single cell genomic atlas of the adult human breast [visium] |
| GSE234817 |
A spatially resolved single cell genomic atlas of the adult human breast [snRNA_nuclei] |
| GSE235326 |
A spatially resolved single cell genomic atlas of the adult human breast [scRNA_cells] |
|
| Relations |
| BioProject |
PRJNA801681 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE195665_RAW.tar |
32.3 Gb |
(http)(custom) |
TAR (of H5) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
|
|
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