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| Status |
Public on Jan 15, 2013 |
| Title |
Ikaros target genes in the mouse pre-B cell line B3 |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by array
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
23303821 |
| Submission date |
May 24, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Gopuraja Dharmalingam |
| Organization name |
MRC London Institute of Medical Sciences
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| Department |
Epigenetics section
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| Street address |
Faculty of Medicine, Imperial College, Hammersmith Hospital Campus
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| City |
London |
| ZIP/Postal code |
W12 0NN |
| Country |
United Kingdom |
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| Platforms (3) |
| GPL1261 |
[Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array |
| GPL6246 |
[MoGene-1_0-st] Affymetrix Mouse Gene 1.0 ST Array [transcript (gene) version] |
| GPL9250 |
Illumina Genome Analyzer II (Mus musculus) |
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| Samples (30)
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| GSM934758 |
Ikaros transduced cells 48h, biological rep1 |
| GSM934759 |
Ikaros transduced cells 48h, biological rep2 |
| GSM934760 |
159A-Ikaros transduced cells 48h, biological rep1 |
| GSM934761 |
159A-Ikaros transduced cells 48h, biological rep2 |
| GSM934762 |
Ikaros-ERt2 cells 2h OHT, biological rep1 |
| GSM934763 |
Ikaros-ERt2 cells 2h OHT, biological rep2 |
| GSM934764 |
Ikaros-ERt2 cells 2h OHT, biological rep3 |
| GSM934765 |
Ikaros-ERt2 cells 6h OHT, biological rep1 |
| GSM934766 |
Ikaros-ERt2 cells 6h OHT, biological rep2 |
| GSM934767 |
Ikaros-ERt2 cells 6h OHT, biological rep3 |
| GSM934768 |
vector-ERt2 cells 6h OHT, biological rep1 |
| GSM934769 |
vector-ERt2 cells 6h OHT, biological rep2 |
| GSM934770 |
vector-ERt2 cells 6h OHT, biological rep3 |
| GSM936199 |
endogenous Ikaros, rep1 |
| GSM936200 |
endogenous Ikaros, rep2 |
| GSM936201 |
epitope-tagged HA-Ikaros, rep1 |
| GSM936202 |
epitope-tagged HA-Ikaros, rep2 |
| GSM936203 |
input DNA, rep1 |
| GSM936204 |
input DNA, rep2 |
| GSM936205 |
input DNA, rep3 |
| GSM1040573 |
endogenous Ikaros_rep1, lanes 1 and 2 [primary pre-B cells] |
| GSM1040574 |
endogenous Ikaros_rep2, lanes 1 and 2 [primary pre-B cells] |
| GSM1040575 |
input DNA_rep1 [primary pre-B cells] |
| GSM1040576 |
input DNA_rep2 [primary pre-B cells] |
| GSM1044998 |
Ikaros transduced cells 48h, biological rep1 [primary pre-B cells] |
| GSM1044999 |
Ikaros transduced cells 48h, biological rep2 [primary pre-B cells] |
| GSM1045000 |
Ikaros transduced cells 48h, biological rep3 [primary pre-B cells] |
| GSM1045001 |
control vector transduced cells 48h, biological rep1 [primary pre-B cells] |
| GSM1045002 |
control vector transduced cells 48h, biological rep2 [primary pre-B cells] |
| GSM1045003 |
control vector transduced cells 48h, biological rep3 [primary pre-B cells] |
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| This SuperSeries is composed of the following SubSeries:
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| GSE38110 |
Gene expression in mouse pre-B cells transduced with Ikaros. |
| GSE38169 |
Genome-wide identification of Ikaros binding sites in pre-B cells |
| GSE42462 |
Genome-wide identification of Ikaros binding sites in primary pre-B cells |
| GSE42551 |
Gene expression in mouse primary pre-B cells transduced with Ikaros |
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| Relations |
| BioProject |
PRJNA167442 |
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