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Series GSE50244 Query DataSets for GSE50244
Status Public on Jul 17, 2014
Title Global transcriptomic analysis of human pancreatic islets reveals novel genes influencing glucose metabolism [RNA-seq]
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Here we harnessed the potential of RNA sequencing in 89 human pancreatic islet donors to identify genes and exons regulated in this relevant tissue for T2D.
 
Overall design mRNA profiles of 89 human pancreatic islet donors having different levels of blood glucose (HbA1c) with and without T2D. The data was generated by deep sequencing using Illumina HiSeq 2000.
 
Contributor(s) Fadista J, Groop L
Citation(s) 25015099, 25201977, 25489054, 28637794, 31550518, 33402679
Submission date Aug 27, 2013
Last update date Jan 19, 2021
Contact name Joao Fadista
E-mail(s) joao.fadista@med.lu.se
Organization name Lund University Diabetes Centre
Street address Jan Waldenströms gata 35
City Malmö
ZIP/Postal code 205 02
Country Sweden
 
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (89)
GSM1216753 1
GSM1216754 2
GSM1216755 3
This SubSeries is part of SuperSeries:
GSE50398 Global transcriptomic analysis of human pancreatic islets reveals novel genes influencing glucose metabolism
Relations
BioProject PRJNA217347
SRA SRP029262

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE50244_DEXSeq.hg19.gff.gz 3.0 Mb (ftp)(http) GFF
GSE50244_Exons_counts_TMM_NormLength_atLeastMAF5_expressed.txt.gz 45.7 Mb (ftp)(http) TXT
GSE50244_Exons_counts_TMM_NormLength_atLeastMAF5_expressed_coord.txt.gz 1.9 Mb (ftp)(http) TXT
GSE50244_Genes_counts_TMM_NormLength_atLeastMAF5_expressed.txt.gz 8.8 Mb (ftp)(http) TXT
GSE50244_Genes_counts_TMM_NormLength_atLeastMAF5_expressed_coord_noChrPrefix.txt.gz 236.1 Kb (ftp)(http) TXT
GSE50244_genes.gtf.gz 5.6 Mb (ftp)(http) GTF
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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