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Series GSE83798 Query DataSets for GSE83798
Status Public on Aug 10, 2017
Title Brain RNA-seq 120 days after worker-gamergate transitions in Harpegnathos ants
Organism Harpegnathos saltator
Experiment type Expression profiling by high throughput sequencing
Summary Harpegnathos workers were induced to transition to reproductive gamergates and 120 days later mRNA from their brains was sequenced to determine changes in gene expressioin
 
Overall design Ants were removed from their original colony at d0 and placed in boxes lacking a dominant reproductive. After 120 days individuals were scored for reproductive status by inspecting their ovaries and brains (minus optic lobes) were dissected and processed for sequencing.
 
Contributor(s) Bonasio R, Gospocic J, Shields E
Citation(s) 28802044, 34838024
Submission date Jun 28, 2016
Last update date Feb 04, 2022
Contact name Roberto Bonasio
Organization name University of Pennsylvania
Department Cell and Developmental Biology
Lab Bonasio
Street address 3400 Civic Center Blvd - SCTR 9-111
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platforms (1)
GPL22089 Illumina NextSeq 500 (Harpegnathos saltator)
Samples (47)
GSM2218909 Gamergate brain - d120 - rep1
GSM2218910 Gamergate brain - d120 - rep2
GSM2218911 Gamergate brain - d120 - rep3
This SubSeries is part of SuperSeries:
GSE83807 Caste-specific gene expression in ants
Relations
BioProject PRJNA327090
SRA SRP077502

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SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE83798_170808_mapping.xlsx.gz 7.6 Kb (ftp)(http) XLSX
GSE83798_Hsal.brains.transition.d120.DESeq2.txt.gz 546.9 Kb (ftp)(http) TXT
GSE83798_Hsal.brains.transition.d120.RPKMs.txt.gz 3.3 Mb (ftp)(http) TXT
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Processed data are available on Series record
Raw data are available in SRA
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