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| Status |
Public on Feb 16, 2018 |
| Title |
Response of potato sRNAome to PVYNTN infection [smallRNA-Seq] |
| Organism |
Solanum tuberosum |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
We aimed at unraveling the role of small RNAs in a complex immune signaling network controlling defense responses that render the plant tolerant to viral infection. We have identified and quantified miRNAs, phasiRNA and virus-derived small RNAs in both, the PVYNTN-tolerant cv. Désirée and its susceptible transgenic counterpart impaired in accumulation of salicylic acid (NahG-Désirée). We have constructed a small RNA regulatory network using in silico prediction results as well as degradome sequencing to link our data to the physiological response (target transcript abundances and hormone levels).
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| Overall design |
small RNA-seq data of PVYNTN-infected (PVY1, PVY2, PVY3) and mock (mock1, mock2, mock3) inoculated potato plants of cv. Désirée and NahG-Désirée. Three plants per treatment were used.
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| Contributor(s) |
Križnik M, Petek M, Dobnik D, Gruden K |
| Citation(s) |
29312421 |
| Submission date |
Jul 26, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Marko Petek |
| E-mail(s) |
marko.petek@nib.si
|
| Organization name |
National Institute of Biology
|
| Department |
Department of Biotechnology and Systems Biology
|
| Street address |
Večna pot 111
|
| City |
Ljubljana |
| ZIP/Postal code |
1000 |
| Country |
Slovenia |
| |
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| Platforms (1) |
| GPL16436 |
Illumina HiSeq 2000 (Solanum tuberosum) |
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| Samples (12)
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| This SubSeries is part of SuperSeries: |
| GSE84967 |
Response of potato sRNAome to PVYNTN infection |
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| Relations |
| BioProject |
PRJNA335362 |
| SRA |
SRP079898 |
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