|
Status |
Public on Feb 16, 2018 |
Title |
Response of potato sRNAome to PVYNTN infection [degradome-Seq] |
Organism |
Solanum tuberosum |
Experiment type |
Other
|
Summary |
We aimed at unraveling the role of small RNAs in a complex immune signaling network controlling defense responses that render the plant tolerant to viral infection. We have identified and quantified miRNAs, phasiRNA and virus-derived small RNAs in both, the PVYNTN-tolerant cv. Désirée and its susceptible transgenic counterpart impaired in accumulation of salicylic acid (NahG-Désirée). We have constructed a small RNA regulatory network using in silico prediction results as well as degradome sequencing to link our data to the physiological response (target transcript abundances and hormone levels).
|
|
|
Overall design |
Degradome-seq data of PVYNTN-infected (PVY) and mock (MOCK) inoculated potato plants of cv. Désirée and NahG-Désirée. Samples were obtained by pooling RNA samples of three plants per treatment.
|
|
|
Contributor(s) |
Križnik M, Petek M, Dobnik D, Gruden K |
Citation(s) |
29312421 |
Submission date |
Jul 28, 2016 |
Last update date |
May 15, 2019 |
Contact name |
Marko Petek |
E-mail(s) |
marko.petek@nib.si
|
Organization name |
National Institute of Biology
|
Department |
Department of Biotechnology and Systems Biology
|
Street address |
Večna pot 111
|
City |
Ljubljana |
ZIP/Postal code |
1000 |
Country |
Slovenia |
|
|
Platforms (1) |
GPL22257 |
Illumina HiSeq 2500 (Solanum tuberosum) |
|
Samples (4)
|
|
This SubSeries is part of SuperSeries: |
GSE84967 |
Response of potato sRNAome to PVYNTN infection |
|
Relations |
BioProject |
PRJNA335760 |
SRA |
SRP080158 |