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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2012-09-11 21:09:39 UTC
Update Date2022-09-22 18:34:26 UTC
HMDB IDHMDB0036093
Secondary Accession Numbers
  • HMDB36093
Metabolite Identification
Common NameAbscisic acid
DescriptionAbscisic acid is found in american cranberry. Abscisic acid is used to regulate ripening of fruit Abscisic acid (ABA) is an isoprenoid plant hormone, which is synthesized in the plastidal 2-C-methyl-d-erythritol-4-phosphate (MEP) pathway; unlike the structurally related sesquiterpenes, which are formed from the mevalonic acid-derived precursor farnesyl diphosphate (FDP), the C15 backbone of ABA is formed after cleavage of C40 carotenoids in MEP. Zeaxanthin is the first committed ABA precursor; a series of enzyme-catalyzed epoxidations and isomerizations, and final cleavage of the C40 carotenoid by a dioxygenation reaction yields the proximal ABA precursor, xanthoxin, which is then further oxidized to ABA. Abamine has been patented by the Japanese researchers Shigeo Yoshida and Tadao Asami, which are very reluctant to make this substance available in general, neither commercially nor for research purposes. Abscisic acid (ABA), also known as abscisin II and dormin, is a plant hormone. It functions in many plant developmental processes, including bud dormancy
Structure
Data?1563862819
Synonyms
ValueSource
2-trans-ABAChEBI
AbscisateGenerator
5-(1-Hydroxy-2,6,6-trimethyl-4-oxo-2-cyclohexen-1-yl)-3-methyl-2,4-pentadienoic acid, 9ciHMDB
Abscisin IIHMDB
DorminHMDB
2-trans-AbscisateGenerator
Abscisic acidMeSH
AbscissinsMeSH
Abscisic acid monoammonium salt, (R)-isomerMeSH
Abscisic acid, (e,Z)-(+,-)-isomerMeSH
Abscisic acid, (R)-isomerMeSH
Abscisic acid, (Z,e)-isomerMeSH
Abscisic acid, (+,-)-isomerMeSH
Abscisic acid, (e,e)-(+-)-isomerMeSH
Abscissic acidMeSH
Chemical FormulaC15H20O4
Average Molecular Weight264.3169
Monoisotopic Molecular Weight264.136159128
IUPAC Name(2E,4E)-5-(1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl)-3-methylpenta-2,4-dienoic acid
Traditional Nameabscisic acid, (+)-
CAS Registry Number7773-56-0
SMILES
C\C(\C=C\C1(O)C(C)=CC(=O)CC1(C)C)=C/C(O)=O
InChI Identifier
InChI=1S/C15H20O4/c1-10(7-13(17)18)5-6-15(19)11(2)8-12(16)9-14(15,3)4/h5-8,19H,9H2,1-4H3,(H,17,18)/b6-5+,10-7+
InChI KeyJLIDBLDQVAYHNE-WEYXYWBQSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as abscisic acids and derivatives. These are terpene compounds containing the abscisic acid moiety, which is characterized by a 3-methylpenta-2,4-dienoic acid attached to the C1 carbon of a 4-oxocyclohex-2-ene moiety.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassSesquiterpenoids
Direct ParentAbscisic acids and derivatives
Alternative Parents
Substituents
  • Abscisic acid
  • Medium-chain fatty acid
  • Branched fatty acid
  • Cyclohexenone
  • Hydroxy fatty acid
  • Methyl-branched fatty acid
  • Fatty acyl
  • Fatty acid
  • Unsaturated fatty acid
  • Tertiary alcohol
  • Ketone
  • Cyclic ketone
  • Monocarboxylic acid or derivatives
  • Carboxylic acid
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Organooxygen compound
  • Hydrocarbon derivative
  • Carbonyl group
  • Organic oxide
  • Alcohol
  • Aliphatic homomonocyclic compound
Molecular FrameworkAliphatic homomonocyclic compounds
External Descriptors
Ontology
Physiological effect
Disposition
Process
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point161 - 163 °CNot Available
Boiling PointNot AvailableNot Available
Water Solubility1472 mg/L @ 25 °C (est)The Good Scents Company Information System
LogPNot AvailableNot Available
Experimental Chromatographic Properties

Experimental Collision Cross Sections

Adduct TypeData SourceCCS Value (Å2)Reference
[M-H]-Baker174.39930932474
[M+H]+Baker160.55830932474
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.18 g/LALOGPS
logP1.88ALOGPS
logP2.09ChemAxon
logS-3.2ALOGPS
pKa (Strongest Acidic)4.74ChemAxon
pKa (Strongest Basic)-3.5ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area74.6 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity74.98 m³·mol⁻¹ChemAxon
Polarizability28.33 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+182.49930932474
DeepCCS[M-H]-180.14130932474
DeepCCS[M-2H]-213.02830932474
DeepCCS[M+Na]+188.59330932474
AllCCS[M+H]+162.032859911
AllCCS[M+H-H2O]+158.632859911
AllCCS[M+NH4]+165.332859911
AllCCS[M+Na]+166.232859911
AllCCS[M-H]-165.932859911
AllCCS[M+Na-2H]-166.332859911
AllCCS[M+HCOO]-167.032859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Abscisic acidC\C(\C=C\C1(O)C(C)=CC(=O)CC1(C)C)=C/C(O)=O3851.8Standard polar33892256
Abscisic acidC\C(\C=C\C1(O)C(C)=CC(=O)CC1(C)C)=C/C(O)=O2028.7Standard non polar33892256
Abscisic acidC\C(\C=C\C1(O)C(C)=CC(=O)CC1(C)C)=C/C(O)=O2243.3Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Abscisic acid,1TMS,isomer #1CC1=CC(=O)CC(C)(C)C1(/C=C/C(C)=C/C(=O)O)O[Si](C)(C)C2338.6Semi standard non polar33892256
Abscisic acid,1TMS,isomer #2CC1=CC(=O)CC(C)(C)C1(O)/C=C/C(C)=C/C(=O)O[Si](C)(C)C2307.1Semi standard non polar33892256
Abscisic acid,1TMS,isomer #3CC1=CC(O[Si](C)(C)C)=CC(C)(C)C1(O)/C=C/C(C)=C/C(=O)O2293.2Semi standard non polar33892256
Abscisic acid,2TMS,isomer #1CC1=CC(=O)CC(C)(C)C1(/C=C/C(C)=C/C(=O)O[Si](C)(C)C)O[Si](C)(C)C2349.5Semi standard non polar33892256
Abscisic acid,2TMS,isomer #2CC1=CC(O[Si](C)(C)C)=CC(C)(C)C1(/C=C/C(C)=C/C(=O)O)O[Si](C)(C)C2301.5Semi standard non polar33892256
Abscisic acid,2TMS,isomer #3CC1=CC(O[Si](C)(C)C)=CC(C)(C)C1(O)/C=C/C(C)=C/C(=O)O[Si](C)(C)C2280.2Semi standard non polar33892256
Abscisic acid,3TMS,isomer #1CC1=CC(O[Si](C)(C)C)=CC(C)(C)C1(/C=C/C(C)=C/C(=O)O[Si](C)(C)C)O[Si](C)(C)C2286.7Semi standard non polar33892256
Abscisic acid,3TMS,isomer #1CC1=CC(O[Si](C)(C)C)=CC(C)(C)C1(/C=C/C(C)=C/C(=O)O[Si](C)(C)C)O[Si](C)(C)C2240.8Standard non polar33892256
Abscisic acid,1TBDMS,isomer #1CC1=CC(=O)CC(C)(C)C1(/C=C/C(C)=C/C(=O)O)O[Si](C)(C)C(C)(C)C2576.1Semi standard non polar33892256
Abscisic acid,1TBDMS,isomer #2CC1=CC(=O)CC(C)(C)C1(O)/C=C/C(C)=C/C(=O)O[Si](C)(C)C(C)(C)C2555.5Semi standard non polar33892256
Abscisic acid,1TBDMS,isomer #3CC1=CC(O[Si](C)(C)C(C)(C)C)=CC(C)(C)C1(O)/C=C/C(C)=C/C(=O)O2530.5Semi standard non polar33892256
Abscisic acid,2TBDMS,isomer #1CC1=CC(=O)CC(C)(C)C1(/C=C/C(C)=C/C(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C2817.8Semi standard non polar33892256
Abscisic acid,2TBDMS,isomer #2CC1=CC(O[Si](C)(C)C(C)(C)C)=CC(C)(C)C1(/C=C/C(C)=C/C(=O)O)O[Si](C)(C)C(C)(C)C2776.6Semi standard non polar33892256
Abscisic acid,2TBDMS,isomer #3CC1=CC(O[Si](C)(C)C(C)(C)C)=CC(C)(C)C1(O)/C=C/C(C)=C/C(=O)O[Si](C)(C)C(C)(C)C2761.7Semi standard non polar33892256
Abscisic acid,3TBDMS,isomer #1CC1=CC(O[Si](C)(C)C(C)(C)C)=CC(C)(C)C1(/C=C/C(C)=C/C(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3004.0Semi standard non polar33892256
Abscisic acid,3TBDMS,isomer #1CC1=CC(O[Si](C)(C)C(C)(C)C)=CC(C)(C)C1(/C=C/C(C)=C/C(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C2863.7Standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Abscisic acid GC-MS (Non-derivatized) - 70eV, Positivesplash10-00kk-9450000000-abcf2d1ec6535e6a49492017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Abscisic acid GC-MS (2 TMS) - 70eV, Positivesplash10-0096-7139000000-5edf01db0ed23b0bca612017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Abscisic acid GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Abscisic acid 10V, Positive-QTOFsplash10-00kb-0090000000-e090d5e5d8a044842e8a2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Abscisic acid 20V, Positive-QTOFsplash10-1000-3490000000-d311ea8211a2e8f4c6a32017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Abscisic acid 40V, Positive-QTOFsplash10-0a4r-9400000000-379f6e47332810fc86652017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Abscisic acid 10V, Negative-QTOFsplash10-03xr-0190000000-d73e6e31641b18526be92017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Abscisic acid 20V, Negative-QTOFsplash10-03xs-1190000000-eb916a142225348efa112017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Abscisic acid 40V, Negative-QTOFsplash10-0zfr-9640000000-e8f018bfe6e08cb1e1902017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Abscisic acid 10V, Negative-QTOFsplash10-0udi-0930000000-dc67a27bb398ff743faa2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Abscisic acid 20V, Negative-QTOFsplash10-0udi-0940000000-009dee4f07b7ce801e962021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Abscisic acid 40V, Negative-QTOFsplash10-0udi-0290000000-5a9c5c87e8815f3d504d2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Abscisic acid 10V, Positive-QTOFsplash10-0f6t-0290000000-e1705792376e7932e6302021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Abscisic acid 20V, Positive-QTOFsplash10-0udr-2790000000-ac880c4375dc4aa9c18a2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Abscisic acid 40V, Positive-QTOFsplash10-0005-9500000000-dbce2cecb6142397caa82021-09-24Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
  • Membrane
Biospecimen Locations
  • Blood
  • Urine
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodExpected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedCancer patients undergoing total body irradiation details
UrineDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedCancer patients undergoing total body irradiation details
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB014933
KNApSAcK IDC00000134
Chemspider ID4524740
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkAbscisic acid
METLIN IDNot Available
PubChem Compound5375200
PDB IDNot Available
ChEBI ID62426
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1620861
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Lovegrove A, Hooley R: Gibberellin and abscisic acid signalling in aleurone. Trends Plant Sci. 2000 Mar;5(3):102-10. [PubMed:10707075 ]
  2. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  3. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  4. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  5. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  6. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  7. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.