Planctomycetes bacterium SCGC JGI090-P21 (unscreened)

Browse Genome BLAST Genome Download Data

April 9, 2021: Statement on the Use of Genomics Data Read more at IMG Help

Overview
Statistics
Explore

Version Information
Study Name (Proposal Name)	Unraveling the unique microbial diversity of the Etoliko lagoon in Western Greece through a single cell genomics approach
Organism Name	Planctomycetes bacterium SCGC JGI090-P21 (unscreened)
Taxon ID	2264265205
IMG Submission ID	8597
NCBI Taxon ID	1130375
GOLD IDs in IMG Database	Study ID: Gs0034313 Project ID: Gp0015319 Analysis ID: Ga0025589
GOLD Analysis Project Type	Single Cell Analysis (unscreened)
Submission Type	Reanalysis
ITS AP ID	1423594
JGI Analysis Product Name	Microbial Minimal Draft Single Cell Unscreened Genome
JGI Analysis Project Type	Single Cell Analysis (unscreened)
SRA ID	n/a
SRA Run	n/a
JGI Data Utilization Status	Unrestricted
Is Public	Yes
External Links	JGI Portal
NCBI Taxonomy Lineage	Bacteria; Planctomycetota; unclassified; unclassified; unclassified; unclassified; Planctomycetes bacterium JGI 0000090-P21
GTDB-Tk Taxonomy Lineage	Bacteria; Planctomycetota; Phycisphaerae; UBA1845; PWPN01; Unclassified; Unclassified
CheckM2 Completeness	26.52
CheckM2 Contamination	2.06
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
High Quality	No
Comment	Released per IMG Data Release Policy (August 6, 2015)
Public Release Date	2015-08-06
Add Date	2012-05-21
Modified Date	2015-08-06
IMG Release/Pipeline Version
IMG Annotation Version	n/a
Annotation Method	n/a
Project Information
Award DOI	10.46936/10.25585/60007349
Cultured	No
Funding Program	CSP
Funding Year	2011
Is Published	No
NCBI Bioproject Accession	PRJNA165609
NCBI Biosample Accession	SAMN02745919
Sequencing Status	Complete
Sequencing Strategy	Whole Genome Sequencing
Type Strain	Unknown
Uncultured Type	Single Cell

To view rows that are zero, go to MyIMG preferences
and set "Hide Zeroes in Genome Statistics" to "No".

	Number	% of Total
DNA, total number of bases	1230646	100.00%
DNA coding number of bases	1067601	86.75%
DNA G+C number of bases	605434	49.20% ¹

DNA scaffolds	242	100.00%

Genes total number	1341	100.00%
Protein coding genes	1319	98.36%
RNA genes	22	1.64%
rRNA genes	2	0.15%
5S rRNA	1	0.07%
16S rRNA	1	0.07%
tRNA genes	18	1.34%
Other RNA genes	2	0.15%
Protein coding genes with function prediction	837	62.42%
without function prediction	482	35.94%
Protein coding genes with enzymes	223	16.63%
Protein coding genes connected to KEGG pathways³	240	17.90%
not connected to KEGG pathways	1079	80.46%
Protein coding genes connected to KEGG Orthology (KO)	385	28.71%
not connected to KEGG Orthology (KO)	934	69.65%
Protein coding genes connected to MetaCyc pathways	191	14.24%
not connected to MetaCyc pathways	1128	84.12%
Protein coding genes with COGs³	526	39.22%
with KOGs³	149	11.11%
with Pfam³	855	63.76%
with TIGRfam³	274	20.43%
in internal clusters	136	10.14%
Protein coding genes coding signal peptides	80	5.97%
Protein coding genes coding transmembrane proteins	282	21.03%
COG clusters	406	8.77%
KOG clusters	114	2.35%
Pfam clusters	762	3.97%
TIGRfam clusters	251	5.59%
Internal clusters	64
Predicted Viruses	2
Predicted Plasmids		Pending process

Notes:

1 - GC percentage shown as count of G's and C's divided by the total number of bases.
The total number of bases is not necessarily synonymous with a total number of G's, C's, A's, and T's.
2 - Pseudogenes may also be counted as protein coding or RNA genes, so is not additive under total gene count.
3 - Graphical view available.

Kmer Frequency Analysis

Scaffold search allows for seaching for all scaffolds within an organism or microbiome.
Please enter a search term or matching substring for scaffold name or read ID.

or enter low and high range for