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unclassified Nitrospina Bin 25

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Study Name (Proposal Name) Marine microbial communities from the northern Gulf of Mexico hypoxic zone
Organism Name unclassified Nitrospina Bin 25
Taxon ID 2651870060
IMG Submission ID 79726
NCBI Taxon ID 35800
GOLD IDs in IMG Database Study ID: Gs0113935  Project ID: Gp0109593  Analysis ID: Ga0113617  
GOLD Analysis Project Type Metagenome-Assembled Genome
Submission Type Primary
JGI Analysis Project Type Metagenome-Assembled Genome
SRA ID n/a
SRA Run n/a
JGI Data Utilization Status Not subject to JGI Data Policy, sequenced elsewhere
Is Public Yes
External Links JGI Portal
NCBI Taxonomy Lineage Bacteria; Nitrospinota; Nitrospinia; Nitrospinales; Nitrospinaceae; Nitrospina; unclassified
GTDB-Tk Taxonomy Lineage Bacteria; Nitrospinota; Nitrospinia; Nitrospinales; Unclassified; Unclassified; Unclassified
CheckM2 Completeness 91.99
CheckM2 Contamination .37
Sequencing Status Permanent Draft
Sequencing Center Argonne National Laboratory
High Quality No
Comment released per PI's request
Version Information  
Public Release Date 2016-12-19
Add Date 2016-03-01
Modified Date 2016-12-19
IMG Release/Pipeline Version
IMG Annotation Version n/a
Annotation Method n/a
Project Information  
Cultured No
Is Published No
Uncultured Type Metagenomic
Hint

To view rows that are zero, go to MyIMG preferences
and set "Hide Zeroes in Genome Statistics" to "No".


Number % of Total
DNA, total number of bases 4158979 100.00%
        DNA coding number of bases 3678998 88.46%
        DNA G+C number of bases 1567494 37.69% 1
                       
DNA scaffolds 431 100.00%
                       
Genes total number 3917 100.00%
        Protein coding genes 3879 99.03%
        RNA genes 38 0.97%
                rRNA genes 3 0.08%
                        5S rRNA 1 0.03%
                        16S rRNA 1 0.03%
                        23S rRNA 1 0.03%
                tRNA genes 31 0.79%
                Other RNA genes 4 0.10%
        Protein coding genes with function prediction 2736 69.85%
                without function prediction 1143 29.18%
        Protein coding genes with enzymes 843 21.52%
        Protein coding genes connected to KEGG pathways3 883 22.54%
                not connected to KEGG pathways 2996 76.49%
        Protein coding genes connected to KEGG Orthology (KO) 1447 36.94%
                not connected to KEGG Orthology (KO) 2432 62.09%
        Protein coding genes connected to MetaCyc pathways 740 18.89%
                not connected to MetaCyc pathways 3139 80.14%
        Protein coding genes with COGs3 1958 49.99%
                with KOGs3 574 14.65%
                with Pfam3 2862 73.07%
                with TIGRfam3 962 24.56%
                in internal clusters 890 22.72%
        Protein coding genes coding signal peptides 238 6.08%
        Protein coding genes coding transmembrane proteins 1173 29.95%
COG clusters 1215 26.24%
KOG clusters 398 8.20%
Pfam clusters 1774 9.25%
TIGRfam clusters 825 18.38%
Predicted Viruses 1
Predicted Plasmids Pending process

Notes:

1 - GC percentage shown as count of G's and C's divided by the total number of bases.
The total number of bases is not necessarily synonymous with a total number of G's, C's, A's, and T's.
2 - Pseudogenes may also be counted as protein coding or RNA genes, so is not additive under total gene count.
3 - Graphical view available.



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