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Microbiome Details (Assembled Data)

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Study Name (Proposal Name) Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II)
Sample Name Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - Omnitrophica bacterium SCGC_AG-290-C17
Taxon Object ID 3300015153
IMG Submission ID 122767
GOLD IDs in IMG Database Study ID: Gs0111485  Project ID: Gp0196510  Analysis ID: Ga0179701  
GOLD Analysis Project Type Metagenome - Single Particle Sort
Submission Type Primary
ITS AP ID 1131299
JGI Analysis Product Name Single Particle Sort, 16S Negative, Unscreened
JGI Analysis Project Type Metagenome - Single Particle Sort
SRA ID SRX3578547
SRA Run n/a
JGI Data Utilization Status Unrestricted
Is Public Yes
Sequencing Status Permanent Draft
Sequencing Center DOE Joint Genome Institute (JGI)
High Quality
Comment
Version Information  
Public Release Date 2017-06-04
Add Date 2017-04-05
Modified Date 2017-04-05
IMG Release/Pipeline Version IMG Annotation Pipeline v.4.14.7
IMG Annotation Version n/a
Annotation Method n/a
Sample Information  
Award DOI 10.46936/10.25585/60000876
Cultured No
Depth In Meters 0
Ecosystem Environmental
Ecosystem Category Aquatic
Ecosystem Subtype Creek
Ecosystem Type Freshwater
Elevation In Meters 0
Funding Program CSP
Funding Year 2014
Geographic Location USA: Nevada
Habitat freshwater
Is Published No
Isolation creek
Isolation Country USA
Latitude 36.9648
Longitude -116.7241
NCBI Bioproject Accession PRJNA404658
NCBI Biosample Accession SAMN07630144
Nitrate Concentration 1.93 uM
Oxygen Concentration 323.145 uM
Sample Collection Date 2015/7/5
Sample Collection Temperature 10.84 C
Sequencing Method Illumina NextSeq-HO
Sequencing Status Complete
Sequencing Strategy Metagenome
Specific Ecosystem Unclassified
pH 7.08
Project Geographical Map
Assembled
Number % of Assembled
Number of sequences 171 100.00%
Number of bases 1712617 100.00%
        GC count 832342 48.60%
Genes
        RNA genes 25 1.79%
                rRNA genes 3 0.22%
                        5S rRNA 1 0.07%
                        16S rRNA 1 0.07%
                        23S rRNA 1 0.07%
                tRNA genes 22 1.58%
        Protein coding genes 1368 98.21%
                with Product Name 1393 100.00%
                with COG 983 70.57%
                with Pfam 1039 74.59%
                with KO 640 45.94%
                with Enzyme 396 28.43%
                with MetaCyc 269 19.31%
                with KEGG 424 30.44%
COG Clusters 805 17.38%
Pfam Clusters 963 5.02%
Predicted Viruses Pending process
Predicted Plasmids Pending process
Assembly Quality
    Genome Number/Size in Assembly
Detailed Statistics open
QC Comments No reliable estimation.

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