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Microbiome Details (Assembled Data)

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April 9, 2021: Statement on the Use of Genomics Data Read more at IMG Help

Study Name (Proposal Name) Groundwater microbial communities from three deep subsurface sites in Europe
Sample Name Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.D19
Taxon Object ID 3300022116
IMG Submission ID 167923
GOLD IDs in IMG Database Study ID: Gs0127568  Project ID: Gp0225639  Analysis ID: Ga0210213  
GOLD Analysis Project Type Metagenome - Single Particle Sort
Submission Type Primary
ITS AP ID 1151386
JGI Analysis Product Name Single Particle Sort, 16S Negative, Unscreened
JGI Analysis Project Type Metagenome - Single Particle Sort
SRA ID SRX3998087
SRA Run n/a
JGI Data Utilization Status Unrestricted
Is Public Yes
Sequencing Status Permanent Draft
Sequencing Center DOE Joint Genome Institute (JGI)
High Quality
Comment
Version Information  
Public Release Date 2018-02-10
Add Date 2017-12-12
Modified Date 2017-12-12
IMG Release/Pipeline Version IMG Annotation Pipeline v.4.15.2
IMG Annotation Version n/a
Annotation Method n/a
Sample Information  
Award DOI 10.46936/10.25585/60000833
Cultured No
Depth In Meters 171
Ecosystem Environmental
Ecosystem Category Aquatic
Ecosystem Subtype Groundwater
Ecosystem Type Deep subsurface
Funding Program CSP
Funding Year 2017
Geographic Location Sweden: Oskarshamn
Habitat groundwater
Is Published No
Isolation deep subsurface water
Isolation Country Sweden
Latitude 57.4344
Longitude 16.66
NCBI Bioproject Accession PRJNA441863
NCBI Biosample Accession SAMN08778123
Sample Collection Date 2016/11/28
Sequencing Method Illumina NextSeq-HO
Sequencing Status Complete
Sequencing Strategy Metagenome
Specific Ecosystem Unclassified
Project Geographical Map
Assembled
Number % of Assembled
Number of sequences 175 100.00%
Number of bases 2501480 100.00%
        GC count 1315437 52.59%
CRISPR Count 2 -
Genes
        RNA genes 35 1.40%
                rRNA genes 3 0.12%
                        5S rRNA 1 0.04%
                        16S rRNA 1 0.04%
                        23S rRNA 1 0.04%
                tRNA genes 32 1.28%
        Protein coding genes 2460 98.60%
                with Product Name 2495 100.00%
                with COG 1742 69.82%
                with Pfam 1829 73.31%
                with KO 1037 41.56%
                with Enzyme 532 21.32%
                with MetaCyc 330 13.23%
                with KEGG 558 22.36%
COG Clusters 1054 22.76%
Pfam Clusters 1250 6.52%
Predicted Viruses Pending process
Predicted Plasmids Pending process
Assembly Quality
    Genome Number/Size in Assembly
Detailed Statistics open
QC Comments No reliable estimation.

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