KEGG   PATHWAY: cel04144
Entry
cel04144                    Pathway                                
Name
Endocytosis - Caenorhabditis elegans (nematode)
Description
Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
Class
Cellular Processes; Transport and catabolism
Pathway map
cel04144  Endocytosis
cel04144

Other DBs
GO: 0006897
Organism
Caenorhabditis elegans (nematode) [GN:cel]
Gene
CELE_Y116A8C.12  arf-6; ADP-ribosylation factor 6 [KO:K07941]
CELE_F55A12.3  ppk-1; PIPK domain-containing protein [KO:K00889] [EC:2.7.1.68]
CELE_VF11C1L.1  ppk-3; 1-phosphatidylinositol-3-phosphate 5-kinase [KO:K00889] [EC:2.7.1.68]
CELE_C04G6.3  pld-1; Phospholipase [KO:K01115] [EC:3.1.4.4]
CELE_C02C6.1  dyn-1; Dynamin [KO:K01528] [EC:3.6.5.5]
CELE_T20G5.1  chc-1; putative clathrin heavy chain 1 [KO:K04646]
CELE_T20B5.1  apa-2; AP-2 complex subunit alpha [KO:K11824]
CELE_Y71H2B.10  apb-1; AP complex subunit beta [KO:K11825]
CELE_R160.1  dpy-23; AP-2 complex subunit mu [KO:K11826]
CELE_F02E8.3  aps-2; AP complex subunit sigma [KO:K11827]
CELE_ZK1067.1  let-23; receptor protein-tyrosine kinase [KO:K04361] [EC:2.7.10.1]
CELE_M02A10.3  sli-1; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
CELE_T04D1.3  unc-57; Endophilin-A homolog [KO:K11247]
CELE_F35A5.8  F35A5.8; SH3 domain-containing GRB2-like protein B1 [KO:K11248]
CELE_F58G6.1  amph-1; Amphiphysin [KO:K12562]
CELE_T04C10.2  epn-1; ENTH domain-containing protein [KO:K12471]
CELE_ZK1248.3  ehs-1; Eps15 (endocytosis protein) Homologous Sequence [KO:K12472]
CELE_F57B10.9  spg-20; Inheritance of peroxisomes protein 1 [KO:K19366]
CELE_Y92H12A.2  Y92H12A.2; E3 ubiquitin-protein ligase [KO:K10591] [EC:2.3.2.26]
CELE_Y65B4BR.4  wwp-1; E3 ubiquitin-protein ligase wwp-1 [KO:K05633] [EC:2.3.2.26]
CELE_M110.5  dab-1; PID domain-containing protein [KO:K12475]
CELE_W02B3.2  grk-2; G protein-coupled receptor kinase 2 [KO:K00910] [EC:2.7.11.15]
CELE_F19C6.1  grk-1; G protein-coupled receptor kinase 1 [KO:K08291] [EC:2.7.11.16]
CELE_F53H8.2  arr-1; Beta-arrestin arr-1 [KO:K04439]
CELE_C07G1.4  wsp-1; CRIB domain-containing protein [KO:K23612]
CELE_K07C5.1  arx-2; Actin-related protein 2 [KO:K17260]
CELE_Y71F9AL.16  arx-1; Actin-related protein 3 [KO:K18584]
CELE_Y79H2A.6  arx-3; Actin-related protein 2/3 complex subunit [KO:K05757]
CELE_Y6D11A.2  arx-4; putative actin-related protein 2/3 complex subunit 2 [KO:K05758]
CELE_Y37D8A.1  arx-5; putative actin-related protein 2/3 complex subunit 3 [KO:K05756]
CELE_C35D10.16  arx-6; putative actin-related protein 2/3 complex subunit 4 [KO:K05755]
CELE_C46H11.3  C46H11.3; putative actin-related protein 2/3 complex subunit 5 [KO:K05754]
CELE_M01B12.3  arx-7; Actin-related protein 2/3 complex subunit 5 [KO:K05754]
CELE_F26D10.3  hsp-1; Heat shock protein hsp-1 [KO:K03283]
CELE_F44E5.4  F44E5.4; Heat shock protein 70 [KO:K03283]
CELE_C12C8.1  hsp-70; Heat shock protein 70 [KO:K03283]
CELE_F44E5.5  F44E5.5; Heat shock protein 70 [KO:K03283]
CELE_F11F1.1  F11F1.1; DUF148 domain-containing protein [KO:K03283]
CELE_Y53F4B.21  Y53F4B.21; HEPN_LA2681 domain-containing protein [KO:K18465]
CELE_T05E7.3  T05E7.3; WASH complex subunit strumpellin [KO:K18464]
CELE_Y48E1B.1  ddl-2; WASH complex subunit homolog 1 [KO:K18461]
CELE_F59E12.10  ddl-1; WASH complex subunit homolog 3 [KO:K18463]
CELE_D2024.6  cap-1; F-actin-capping protein subunit alpha [KO:K10364]
CELE_M106.5  cap-2; F-actin-capping protein subunit beta [KO:K10365]
CELE_ZK1128.8  vps-29; Vacuolar protein sorting-associated protein 29 [KO:K18467]
CELE_T20D3.7  vps-26; Vacuolar protein sorting-associated protein 26 [KO:K18466]
CELE_F59G1.3  vps-35; Vacuolar protein sorting-associated protein 35 [KO:K18468]
CELE_W06D4.5  snx-3; PX domain-containing protein [KO:K17918]
CELE_E01B7.1  usp-50; USP domain-containing protein [KO:K11839] [EC:3.4.19.12]
CELE_W03C9.3  rab-7; Ras-related protein Rab-7a [KO:K07897]
CELE_C07G1.5  hgrs-1; Hepatocyte growth factor-regulated tyrosine kinase substrate [KO:K12182]
CELE_C34G6.7  stam-1; Signal transducing adapter molecule 1 [KO:K04705]
CELE_C09G12.9  tsg-101; Tumor susceptibility gene 101 protein [KO:K12183]
CELE_C06A6.3  mvb-12; ESCRT-I complex subunit MVB12A [KO:K12186]
CELE_Y87G2A.10  vps-28; Vacuolar protein sorting-associated protein 28 homolog [KO:K12184]
CELE_CD4.4  vps-37; VPS37 C-terminal domain-containing protein [KO:K12185]
CELE_C27F2.5  vps-22; Vacuolar-sorting protein SNF8 [KO:K12188]
CELE_F17C11.8  vps-36; Vacuolar protein-sorting-associated protein 36 [KO:K12190]
CELE_W02A11.2  vps-25; Vacuolar protein-sorting-associated protein 25 [KO:K12189]
CELE_Y65B4A.3  vps-20; Charged multivesicular body protein 6 [KO:K12195]
CELE_R12C12.5  R12C12.5; Charged multivesicular body protein 4b [KO:K12194]
CELE_C56C10.3  vps-32.1; Charged multivesicular body protein 4b [KO:K12194]
CELE_T27F7.1  vps-24; Charged multivesicular body protein 3 [KO:K12193]
CELE_Y46G5A.12  vps-2; Charged multivesicular body protein 2a [KO:K12191]
CELE_C01A2.4  C01A2.4; Charged multivesicular body protein 2b [KO:K12192]
CELE_T24B8.2  chmp-7; Charged multivesicular body protein 7 [KO:K15053]
CELE_Y34D9A.10  vps-4; vesicle-fusing ATPase [KO:K12196]
CELE_T23G11.7  T23G11.7; Vacuolar protein sorting-associated protein VTA1 homolog [KO:K12199]
CELE_F23C8.6  did-2; Charged multivesicular body protein 1b [KO:K12197]
CELE_F41E6.9  vps-60; Charged multivesicular body protein 5 [KO:K12198]
CELE_K10C8.3  istr-1; IST1 homolog [KO:K19476]
CELE_R10E12.1  alx-1; Apoptosis-linked gene 2-interacting protein X 1 [KO:K12200]
CELE_C05D9.1  snx-1; PX domain-containing protein [KO:K17917]
CELE_Y59A8B.22  snx-6; PX domain-containing protein [KO:K17920]
CELE_Y92H12A.1  src-1; Tyrosine protein-kinase src-1 [KO:K05704] [EC:2.7.10.2]
CELE_Y51H4A.3  rho-1; Ras-like GTP-binding protein rhoA [KO:K04513]
CELE_T13F2.8  cav-1; Caveolin-1 [KO:K06278]
CELE_C56A3.7  cav-2; Caveolin-2 [KO:K12958]
CELE_W06H8.1  rme-1; Dynamin-type G domain-containing protein [KO:K12476]
CELE_T10G3.5  eea-1; FYVE-type domain-containing protein [KO:K12478]
CELE_F26H9.6  rab-5; Ras-related protein Rab-5C [KO:K07888]
CELE_F01F1.4  rabn-5; FYVE-type domain-containing protein [KO:K12480]
CELE_Y42H9AR.3  rabs-5; FYVE-type domain-containing protein [KO:K12481]
CELE_C44C1.4  vps-45; Vacuolar protein sorting-associated protein 45 [KO:K12479]
CELE_T23H2.5  rab-10; Ras-related protein Rab-10 [KO:K07903]
CELE_D1037.4  rab-8; Ras-related protein Rab-8A [KO:K07901]
CELE_Y47D3A.25  rab-35; Ras-related protein Rab-35 [KO:K07876]
CELE_F53G12.1  rab-11.1; Ras-related protein rab-11.1 [KO:K07904]
CELE_W04G5.2  rab-11.2; RAB family [KO:K07904]
CELE_R05D3.7  unc-116; Kinesin heavy chain [KO:K10396]
CELE_F55C12.1  rfip-1; FIP-RBD domain-containing protein [KO:K12485]
CELE_F54E7.3  par-3; PDZ domain-containing protein [KO:K04237]
CELE_T26E3.3  par-6; Partitioning defective protein 6 [KO:K06093]
CELE_F09E5.1  pkc-3; Protein kinase C-like 3 [KO:K06069] [EC:2.7.11.13]
CELE_R07G3.1  cdc-42; Cell division control protein 42 homolog [KO:K04393]
CELE_Y32F6B.3  crp-1; Cdc-42 Related Protein [KO:K04393]
CELE_W09D10.1  smap-1; Arf-GAP domain-containing protein [KO:K12486]
CELE_F14F3.2  git-1; Arf-GAP domain-containing protein [KO:K12487]
CELE_Y17G7B.15  cnt-1; Truncated ctn-1 [KO:K12489]
CELE_Y39A1A.15  cnt-2; Arf-GAP with ANK repeat and PH domain-containing protein cnt-2 [KO:K12491]
CELE_K02B12.7  K02B12.7; Arf-GAP domain-containing protein [KO:K12492]
CELE_F07F6.4  F07F6.4; Uncharacterized protein [KO:K12493]
CELE_Y55D9A.1  efa-6; Exchange factor for Arf-6 [KO:K12494]
CELE_M02B7.5  bris-1; SEC7 domain-containing protein [KO:K12495]
CELE_K06H7.4  grp-1; GTP exchange factor for ARFs 1 [KO:K18441]
CELE_Y6B3A.1  agef-1; SEC7 domain-containing protein [KO:K18442]
CELE_C24H11.7  gbf-1; Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 homolog [KO:K18443]
CELE_B0336.2  arf-1; ADP-ribosylation factor 1-like 2 [KO:K07937]
CELE_F45E4.1  warf-1; ADP-ribosylation factor 1-like 1 [KO:K07937]
CELE_F57H12.1  arf-5; ADP-ribosylation factor [KO:K07939]
Compound
C00035  GDP
C00044  GTP
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
C04637  1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate
C05981  Phosphatidylinositol-3,4,5-trisphosphate
C11556  1-Phosphatidyl-1D-myo-inositol 3,5-bisphosphate
Reference
  Authors
Acconcia F, Sigismund S, Polo S
  Title
Ubiquitin in trafficking: the network at work.
  Journal
Exp Cell Res 315:1610-8 (2009)
DOI:10.1016/j.yexcr.2008.10.014
Reference
  Authors
Donaldson JG, Porat-Shliom N, Cohen LA
  Title
Clathrin-independent endocytosis: a unique platform for cell signaling and PM remodeling.
  Journal
Cell Signal 21:1-6 (2009)
DOI:10.1016/j.cellsig.2008.06.020
Reference
  Authors
Sorkin A
  Title
Cargo recognition during clathrin-mediated endocytosis: a team effort.
  Journal
Curr Opin Cell Biol 16:392-9 (2004)
DOI:10.1016/j.ceb.2004.06.001
Reference
  Authors
Raiborg C, Stenmark H
  Title
The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins.
  Journal
Nature 458:445-52 (2009)
DOI:10.1038/nature07961
Reference
  Authors
Scita G, Di Fiore PP
  Title
The endocytic matrix.
  Journal
Nature 463:464-73 (2010)
DOI:10.1038/nature08910
Reference
  Authors
Le Roy C, Wrana JL
  Title
Clathrin- and non-clathrin-mediated endocytic regulation of cell signalling.
  Journal
Nat Rev Mol Cell Biol 6:112-26 (2005)
DOI:10.1038/nrm1571
Reference
  Authors
Jovic M, Sharma M, Rahajeng J, Caplan S
  Title
The early endosome: a busy sorting station for proteins at the crossroads.
  Journal
Histol Histopathol 25:99-112 (2010)
DOI:10.14670/HH-25.99
Reference
  Authors
Pietiainen VM, Marjomaki V, Heino J, Hyypia T
  Title
Viral entry, lipid rafts and caveosomes.
  Journal
Ann Med 37:394-403 (2005)
DOI:10.1080/07853890510011976
Reference
  Authors
Grant BD, Donaldson JG
  Title
Pathways and mechanisms of endocytic recycling.
  Journal
Nat Rev Mol Cell Biol 10:597-608 (2009)
DOI:10.1038/nrm2755
Reference
  Authors
Cullen PJ, Korswagen HC
  Title
Sorting nexins provide diversity for retromer-dependent trafficking events.
  Journal
Nat Cell Biol 14:29-37 (2012)
DOI:10.1038/ncb2374
Related
pathway
cel04070  Phosphatidylinositol signaling system
cel04130  SNARE interactions in vesicular transport
cel04142  Lysosome
cel04350  TGF-beta signaling pathway
KO pathway
ko04144   
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