KEGG   PATHWAY: cel04144
Entry
cel04144                    Pathway                                
Name
Endocytosis - Caenorhabditis elegans (nematode)
Description
Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
Class
Cellular Processes; Transport and catabolism
Pathway map
cel04144  Endocytosis
cel04144

Other DBs
GO: 0006897
Organism
Caenorhabditis elegans (nematode) [GN:cel]
Gene
CELE_B0336.2  arf-1; ADP-ribosylation factor 1-like 2 [KO:K07937]
CELE_C01A2.4  C01A2.4; Charged multivesicular body protein 2b [KO:K12192]
CELE_C02C6.1  dyn-1; Dynamin [KO:K01528] [EC:3.6.5.5]
CELE_C04G6.3  pld-1; Phospholipase [KO:K01115] [EC:3.1.4.4]
CELE_C05D9.1  snx-1; PX domain-containing protein [KO:K17917]
CELE_C06A6.3  mvb-12; Multivesicular body subunit 12A [KO:K12186]
CELE_C07G1.4  wsp-1; CRIB domain-containing protein [KO:K23612]
CELE_C07G1.5  hgrs-1; Hepatocyte growth factor-regulated tyrosine kinase substrate [KO:K12182]
CELE_C09G12.9  tsg-101; Tumor susceptibility gene 101 protein [KO:K12183]
CELE_C12C8.1  hsp-70; Heat shock protein 70 [KO:K03283]
CELE_C24H11.7  gbf-1; Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 homolog [KO:K18443]
CELE_C27F2.5  vps-22; Vacuolar-sorting protein SNF8 [KO:K12188]
CELE_C34G6.7  stam-1; Signal transducing adapter molecule 1 [KO:K04705]
CELE_C35D10.16  arx-6; putative actin-related protein 2/3 complex subunit 4 [KO:K05755]
CELE_C44C1.4  vps-45; Vacuolar protein sorting-associated protein 45 [KO:K12479]
CELE_C46H11.3  C46H11.3; putative actin-related protein 2/3 complex subunit 5 [KO:K05754]
CELE_C56A3.7  cav-2; Caveolin-2 [KO:K12958]
CELE_C56C10.3  vps-32.1; Charged multivesicular body protein 4b [KO:K12194]
CELE_CD4.4  vps-37; VPS37 C-terminal domain-containing protein [KO:K12185]
CELE_D1037.4  rab-8; Ras-related protein Rab-8A [KO:K07901]
CELE_D2024.6  cap-1; F-actin-capping protein subunit alpha [KO:K10364]
CELE_E01B7.1  usp-50; ubiquitinyl hydrolase 1 [KO:K11839] [EC:3.4.19.12]
CELE_F01F1.4  rabn-5; FYVE-type domain-containing protein [KO:K12480]
CELE_F02E8.3  aps-2; AP complex subunit sigma [KO:K11827]
CELE_F07F6.4  F07F6.4; Uncharacterized protein [KO:K12493]
CELE_F09E5.1  pkc-3; Protein kinase C-like 3 [KO:K06069] [EC:2.7.11.13]
CELE_F11F1.1  F11F1.1; DUF148 domain-containing protein [KO:K03283]
CELE_F14F3.2  git-1; Arf-GAP domain-containing protein [KO:K12487]
CELE_F17C11.8  vps-36; Vacuolar protein-sorting-associated protein 36 [KO:K12190]
CELE_F19C6.1  grk-1; G protein-coupled receptor kinase 1 [KO:K08291] [EC:2.7.11.16]
CELE_F23C8.6  did-2; Charged multivesicular body protein 1b [KO:K12197]
CELE_F26D10.3  hsp-1; Heat shock protein hsp-1 [KO:K03283]
CELE_F35A5.8  F35A5.8; SH3 domain-containing GRB2-like protein B1 [KO:K11248]
CELE_F41E6.9  vps-60; Charged multivesicular body protein 5 [KO:K12198]
CELE_F44E5.4  F44E5.4; Heat shock protein 70 [KO:K03283]
CELE_F44E5.5  F44E5.5; Heat shock protein 70 [KO:K03283]
CELE_F45E4.1  warf-1; ADP-ribosylation factor 1-like 1 [KO:K07937]
CELE_F53G12.1  rab-11.1; Ras-related protein rab-11.1 [KO:K07905]
CELE_F53H8.2  arr-1; Beta-arrestin arr-1 [KO:K04439]
CELE_F54E7.3  par-3; Partitioning defective protein 3 [KO:K04237]
CELE_F55A12.3  ppk-1; PIPK domain-containing protein [KO:K00889] [EC:2.7.1.68]
CELE_F55C12.1  rfip-1; FIP-RBD domain-containing protein [KO:K12485]
CELE_F57B10.9  spg-20; Inheritance of peroxisomes protein 1 [KO:K19366]
CELE_F57H12.1  arf-5; ADP-ribosylation factor [KO:K07939]
CELE_F58G6.1  amph-1; Amphiphysin [KO:K12562]
CELE_F59E12.10  ddl-1; WASH complex subunit homolog 3 [KO:K18463]
CELE_F59G1.3  vps-35; Vacuolar protein sorting-associated protein 35 [KO:K18468]
CELE_K02B12.7  K02B12.7; Arf-GAP domain-containing protein [KO:K12492]
CELE_K06H7.4  grp-1; GTP exchange factor for ARFs 1 [KO:K18441]
CELE_K07C5.1  arx-2; Actin-related protein 2 [KO:K17260]
CELE_K10C8.3  istr-1; IST1 homolog [KO:K19476]
CELE_M01B12.3  arx-7; Actin-related protein 2/3 complex subunit 5 [KO:K05754]
CELE_M02A10.3  sli-1; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
CELE_M02B7.5  bris-1; SEC7 domain-containing protein [KO:K12495]
CELE_M106.5  cap-2; F-actin-capping protein subunit beta [KO:K10365]
CELE_M110.5  dab-1; PID domain-containing protein [KO:K12475]
CELE_R05D3.7  unc-116; Kinesin heavy chain [KO:K10396] [EC:5.6.1.3]
CELE_R07G3.1  cdc-42; Cell division control protein 42 homolog [KO:K04393]
CELE_R10E12.1  alx-1; Apoptosis-linked gene 2-interacting protein X 1 [KO:K12200]
CELE_R12C12.5  R12C12.5; Charged multivesicular body protein 4b [KO:K12194]
CELE_R160.1  dpy-23; AP-2 complex subunit mu [KO:K11826]
CELE_T04C10.2  epn-1; ENTH domain-containing protein [KO:K12471]
CELE_T04D1.3  unc-57; Endophilin-A homolog [KO:K11247]
CELE_T05E7.3  T05E7.3; WASH complex subunit strumpellin [KO:K18464]
CELE_T10G3.5  eea-1; FYVE-type domain-containing protein [KO:K12478]
CELE_T13F2.8  cav-1; Caveolin-1 [KO:K06278]
CELE_T20B5.1  apa-2; AP-2 complex subunit alpha [KO:K11824]
CELE_T20D3.7  vps-26; Vacuolar protein sorting-associated protein 26 [KO:K18466]
CELE_T20G5.1  chc-1; putative clathrin heavy chain 1 [KO:K04646]
CELE_T23G11.7  T23G11.7; HAUS6_N domain-containing protein [KO:K12199]
CELE_T23H2.5  rab-10; Ras-related protein Rab-10 [KO:K07903]
CELE_T24B8.2  chmp-7; Charged multivesicular body protein 7 [KO:K15053]
CELE_T26E3.3  par-6; Partitioning defective protein 6 [KO:K06093]
CELE_T27F7.1  vps-24; Charged multivesicular body protein 3 [KO:K12193]
CELE_VF11C1L.1  ppk-3; 1-phosphatidylinositol-3-phosphate 5-kinase [KO:K00889] [EC:2.7.1.68]
CELE_W02A11.2  vps-25; Vacuolar protein-sorting-associated protein 25 [KO:K12189]
CELE_W02B3.2  grk-2; G protein-coupled receptor kinase 2 [KO:K00910] [EC:2.7.11.15]
CELE_W03C9.3  rab-7; Ras-related protein Rab-7a [KO:K07897]
CELE_W06D4.5  snx-3; PX domain-containing protein [KO:K17918]
CELE_W06H8.1  rme-1; Dynamin-type G domain-containing protein [KO:K12476]
CELE_W09D10.1  smap-1; Arf-GAP domain-containing protein [KO:K12486]
CELE_Y116A8C.12  arf-6; ADP-ribosylation factor 6 [KO:K07941]
CELE_Y17G7B.15  cnt-1; Truncated ctn-1 [KO:K12489]
CELE_Y32F6B.3  crp-1; Cdc-42 Related Protein [KO:K04393]
CELE_Y34D9A.10  vps-4; vesicle-fusing ATPase [KO:K12196]
CELE_Y37D8A.1  arx-5; putative actin-related protein 2/3 complex subunit 3 [KO:K05756]
CELE_Y39A1A.15  cnt-2; Arf-GAP with ANK repeat and PH domain-containing protein cnt-2 [KO:K12491]
CELE_Y42H9AR.3  rabs-5; FYVE-type domain-containing protein [KO:K12481]
CELE_Y46G5A.12  vps-2; Charged multivesicular body protein 2a [KO:K12191]
CELE_Y47D3A.25  rab-35; Ras-related protein Rab-35 [KO:K07876]
CELE_Y48E1B.1  ddl-2; WASH complex subunit homolog 1 [KO:K18461]
CELE_Y51H4A.3  rho-1; Ras-like GTP-binding protein rhoA [KO:K04513]
CELE_Y53F4B.21  Y53F4B.21; HEPN_LA2681 domain-containing protein [KO:K18465]
CELE_Y55D9A.1  efa-6; Exchange factor for Arf-6 [KO:K12494]
CELE_Y59A8B.22  snx-6; PX domain-containing protein [KO:K17920]
CELE_Y65B4A.3  vps-20; Charged multivesicular body protein 6 [KO:K12195]
CELE_Y65B4BR.4  wwp-1; E3 ubiquitin-protein ligase wwp-1 [KO:K05633] [EC:2.3.2.26]
CELE_Y6B3A.1  agef-1; SEC7 domain-containing protein [KO:K18442]
CELE_Y6D11A.2  arx-4; putative actin-related protein 2/3 complex subunit 2 [KO:K05758]
CELE_Y71F9AL.16  arx-1; Actin-related protein 3 [KO:K18584]
CELE_Y71H2B.10  apb-1; AP complex subunit beta [KO:K11825]
CELE_Y79H2A.6  arx-3; Actin-related protein 2/3 complex subunit [KO:K05757]
CELE_Y87G2A.10  vps-28; Vacuolar protein sorting-associated protein 28 homolog [KO:K12184]
CELE_Y92H12A.1  src-1; Tyrosine protein-kinase src-1 [KO:K05704] [EC:2.7.10.2]
CELE_Y92H12A.2  Y92H12A.2; E3 ubiquitin-protein ligase [KO:K10591] [EC:2.3.2.26]
CELE_ZK1067.1  let-23; Receptor tyrosine-protein kinase let-23 [KO:K04361] [EC:2.7.10.1]
CELE_ZK1128.8  vps-29; Vacuolar protein sorting-associated protein 29 [KO:K18467]
CELE_ZK1248.3  ehs-1; Eps15 (endocytosis protein) Homologous Sequence [KO:K12472]
Compound
C00035  GDP
C00044  GTP
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
C04637  1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate
C05981  Phosphatidylinositol-3,4,5-trisphosphate
C11556  1-Phosphatidyl-1D-myo-inositol 3,5-bisphosphate
Reference
  Authors
Acconcia F, Sigismund S, Polo S
  Title
Ubiquitin in trafficking: the network at work.
  Journal
Exp Cell Res 315:1610-8 (2009)
DOI:10.1016/j.yexcr.2008.10.014
Reference
  Authors
Donaldson JG, Porat-Shliom N, Cohen LA
  Title
Clathrin-independent endocytosis: a unique platform for cell signaling and PM remodeling.
  Journal
Cell Signal 21:1-6 (2009)
DOI:10.1016/j.cellsig.2008.06.020
Reference
  Authors
Sorkin A
  Title
Cargo recognition during clathrin-mediated endocytosis: a team effort.
  Journal
Curr Opin Cell Biol 16:392-9 (2004)
DOI:10.1016/j.ceb.2004.06.001
Reference
  Authors
Raiborg C, Stenmark H
  Title
The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins.
  Journal
Nature 458:445-52 (2009)
DOI:10.1038/nature07961
Reference
  Authors
Scita G, Di Fiore PP
  Title
The endocytic matrix.
  Journal
Nature 463:464-73 (2010)
DOI:10.1038/nature08910
Reference
  Authors
Le Roy C, Wrana JL
  Title
Clathrin- and non-clathrin-mediated endocytic regulation of cell signalling.
  Journal
Nat Rev Mol Cell Biol 6:112-26 (2005)
DOI:10.1038/nrm1571
Reference
  Authors
Jovic M, Sharma M, Rahajeng J, Caplan S
  Title
The early endosome: a busy sorting station for proteins at the crossroads.
  Journal
Histol Histopathol 25:99-112 (2010)
DOI:10.14670/HH-25.99
Reference
  Authors
Pietiainen VM, Marjomaki V, Heino J, Hyypia T
  Title
Viral entry, lipid rafts and caveosomes.
  Journal
Ann Med 37:394-403 (2005)
DOI:10.1080/07853890510011976
Reference
  Authors
Grant BD, Donaldson JG
  Title
Pathways and mechanisms of endocytic recycling.
  Journal
Nat Rev Mol Cell Biol 10:597-608 (2009)
DOI:10.1038/nrm2755
Reference
  Authors
Cullen PJ, Korswagen HC
  Title
Sorting nexins provide diversity for retromer-dependent trafficking events.
  Journal
Nat Cell Biol 14:29-37 (2012)
DOI:10.1038/ncb2374
Related
pathway
cel04070  Phosphatidylinositol signaling system
cel04130  SNARE interactions in vesicular transport
cel04142  Lysosome
cel04350  TGF-beta signaling pathway
KO pathway
ko04144   

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