KEGG   PATHWAY: cgr04136
Entry
cgr04136                    Pathway                                
Name
Autophagy - other - Nakaseomyces glabratus
Description
Autophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either in a housekeeping capacity or during stress and senescence. The process of autophagy could be divided into several stages: induction, vesicle nucleation, elongation and closure, and fusion and digestion. Most essential autophagic machineries are conserved throughout eukaryotes (see map04140 for animals and map04138 for fungi). This map is for other eukaryotes including plants and protists, where autophagy related genes (ATGs) play similar roles in the life cycle. However, autophagy has been relatively less studied in lower eukaryotes.
Class
Cellular Processes; Transport and catabolism
Pathway map
cgr04136  Autophagy - other
cgr04136

Other DBs
GO: 0006914
Organism
Nakaseomyces glabratus [GN:cgr]
Gene
2886410  GVI51_A04499; uncharacterized protein [KO:K08341]
2887695  GVI51_F00363; uncharacterized protein [KO:K07203] [EC:2.7.11.1]
2888117  VPS34; VPS34 [KO:K00914] [EC:2.7.1.137]
2888156  GVI51_G09845; uncharacterized protein [KO:K08331]
2888485  ATG11; ATG11 [KO:K08330]
2888493  GVI51_H03509; uncharacterized protein [KO:K08266]
2888594  GVI51_H05709; uncharacterized protein [KO:K17908]
2888624  VPS15; VPS15 [KO:K08333] [EC:2.7.11.1]
2889092  PPH21; PPH21 [KO:K04382] [EC:3.1.3.16]
2889146  GVI51_I03377; uncharacterized protein [KO:K17907]
2889347  GVI51_I05577; uncharacterized protein [KO:K08343]
2889381  GVI51_I02211; uncharacterized protein [KO:K08337]
2889587  GVI51_J07161; uncharacterized protein [KO:K08342] [EC:3.4.22.-]
2889623  VPS30; VPS30 [KO:K08334]
2889899  SPO72; SPO72 [KO:K17906]
2890104  GVI51_K10505; uncharacterized protein [KO:K17908]
2890183  GVI51_K00363; uncharacterized protein [KO:K07203] [EC:2.7.11.1]
2890405  GVI51_K06611; uncharacterized protein [KO:K08336]
2890744  GVI51_L05863; uncharacterized protein [KO:K08269] [EC:2.7.11.1]
2891217  GVI51_M13387; uncharacterized protein [KO:K07204]
2891456  GVI51_M02255; uncharacterized protein [KO:K08339]
2891720  GVI51_M07403; uncharacterized protein [KO:K17606]
Compound
C00350  Phosphatidylethanolamine
C01194  1-Phosphatidyl-D-myo-inositol
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
Reference
  Authors
Duszenko M, Ginger ML, Brennand A, Gualdron-Lopez M, Colombo MI, Coombs GH, Coppens I, Jayabalasingham B, Langsley G, de Castro SL, Menna-Barreto R, Mottram JC, Navarro M, Rigden DJ, Romano PS, Stoka V, Turk B, Michels PA
  Title
Autophagy in protists.
  Journal
Autophagy 7:127-58 (2011)
DOI:10.4161/auto.7.2.13310
Reference
  Authors
Avin-Wittenberg T, Honig A, Galili G
  Title
Variations on a theme: plant autophagy in comparison to yeast and mammals.
  Journal
Protoplasma 249:285-99 (2012)
DOI:10.1007/s00709-011-0296-z
Reference
  Authors
Liu Y, Bassham DC
  Title
Autophagy: pathways for self-eating in plant cells.
  Journal
Annu Rev Plant Biol 63:215-37 (2012)
DOI:10.1146/annurev-arplant-042811-105441
Reference
  Authors
Yoshimoto K
  Title
Beginning to understand autophagy, an intracellular self-degradation system in plants.
  Journal
Plant Cell Physiol 53:1355-65 (2012)
DOI:10.1093/pcp/pcs099
Reference
  Authors
Li F, Chung T, Vierstra RD
  Title
AUTOPHAGY-RELATED11 plays a critical role in general autophagy- and senescence-induced mitophagy in Arabidopsis.
  Journal
Plant Cell 26:788-807 (2014)
DOI:10.1105/tpc.113.120014
Reference
  Authors
Michaeli S, Galili G, Genschik P, Fernie AR, Avin-Wittenberg T
  Title
Autophagy in Plants--What's New on the Menu?
  Journal
Trends Plant Sci 21:134-44 (2016)
DOI:10.1016/j.tplants.2015.10.008
Reference
  Authors
Yang X, Bassham DC
  Title
New Insight into the Mechanism and Function of Autophagy in Plant Cells.
  Journal
Int Rev Cell Mol Biol 320:1-40 (2015)
DOI:10.1016/bs.ircmb.2015.07.005
KO pathway
ko04136   

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