KEGG   PATHWAY: ddi04136
Entry
ddi04136                    Pathway                                
Name
Autophagy - other - Dictyostelium discoideum (cellular slime mold)
Description
Autophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either in a housekeeping capacity or during stress and senescence. The process of autophagy could be divided into several stages: induction, vesicle nucleation, elongation and closure, and fusion and digestion. Most essential autophagic machineries are conserved throughout eukaryotes (see map04140 for animals and map04138 for fungi). This map is for other eukaryotes including plants and protists, where autophagy related genes (ATGs) play similar roles in the life cycle. However, autophagy has been relatively less studied in lower eukaryotes.
Class
Cellular Processes; Transport and catabolism
Pathway map
ddi04136  Autophagy - other
ddi04136

Other DBs
GO: 0006914
Organism
Dictyostelium discoideum (cellular slime mold) [GN:ddi]
Gene
DDB_G0270398  raptor; HEAT repeat-containing protein [KO:K07204]
DDB_G0281569  tor; FRAP subfamily protein kinase [KO:K07203] [EC:2.7.11.1]
DDB_G0292592  lst8; WD40 repeat-containing protein [KO:K08266]
DDB_G0292390  atg1; ULK family protein kinase [KO:K08269] [EC:2.7.11.1]
DDB_G0288287  DUF1649 family protein [KO:K19730]
DDB_G0285767  hypothetical protein [KO:K08330]
DDB_G0279647  hypothetical protein [KO:K17606]
DDB_G0290263  pho2A; protein phosphatase 2A catalytic subunit [KO:K04382] [EC:3.1.3.16]
DDB_G0285323  atg9; autophagy protein 9 [KO:K17907]
DDB_G0277419  hypothetical protein [KO:K17906]
DDB_G0285375  atg18; WD repeat domain phosphoinositide-interacting family protein [KO:K17908]
DDB_G0288021  atg6B; autophagy protein Apg6 family protein [KO:K08334]
DDB_G0289601  pikE; phosphatidylinositol 3-kinase [KO:K00914] [EC:2.7.1.137]
DDB_G0282627  vps15; VPS15 family protein kinase [KO:K08333] [EC:2.7.11.1]
DDB_G0282929  atg12; autophagy protein 12 [KO:K08336]
DDB_G0289881  atg5; autophagy protein 5 [KO:K08339]
DDB_G0275323  tipD; autophagy protein 16 [KO:K17890]
DDB_G0271096  atg7; E1-like enzyme family protein [KO:K08337]
DDB_G0268840  atg10; autophagy protein 10 [KO:K17888]
DDB_G0277319  atg3; autophagy protein 3 [KO:K08343]
DDB_G0286191  atg8; autophagy protein 8 [KO:K08341]
DDB_G0290491  MAP1-LC3 domain-containing protein [KO:K08341]
DDB_G0283753  hypothetical protein [KO:K08342] [EC:3.4.22.-]
DDB_G0273443  atg4-1; autophagy protein 4 [KO:K08342] [EC:3.4.22.-]
DDB_G0273553  atg4-2; autophagy protein 4 [KO:K08342] [EC:3.4.22.-]
Compound
C00350  Phosphatidylethanolamine
C01194  1-Phosphatidyl-D-myo-inositol
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
Reference
  Authors
Duszenko M, Ginger ML, Brennand A, Gualdron-Lopez M, Colombo MI, Coombs GH, Coppens I, Jayabalasingham B, Langsley G, de Castro SL, Menna-Barreto R, Mottram JC, Navarro M, Rigden DJ, Romano PS, Stoka V, Turk B, Michels PA
  Title
Autophagy in protists.
  Journal
Autophagy 7:127-58 (2011)
DOI:10.4161/auto.7.2.13310
Reference
  Authors
Avin-Wittenberg T, Honig A, Galili G
  Title
Variations on a theme: plant autophagy in comparison to yeast and mammals.
  Journal
Protoplasma 249:285-99 (2012)
DOI:10.1007/s00709-011-0296-z
Reference
  Authors
Liu Y, Bassham DC
  Title
Autophagy: pathways for self-eating in plant cells.
  Journal
Annu Rev Plant Biol 63:215-37 (2012)
DOI:10.1146/annurev-arplant-042811-105441
Reference
  Authors
Yoshimoto K
  Title
Beginning to understand autophagy, an intracellular self-degradation system in plants.
  Journal
Plant Cell Physiol 53:1355-65 (2012)
DOI:10.1093/pcp/pcs099
Reference
  Authors
Li F, Chung T, Vierstra RD
  Title
AUTOPHAGY-RELATED11 plays a critical role in general autophagy- and senescence-induced mitophagy in Arabidopsis.
  Journal
Plant Cell 26:788-807 (2014)
DOI:10.1105/tpc.113.120014
Reference
  Authors
Michaeli S, Galili G, Genschik P, Fernie AR, Avin-Wittenberg T
  Title
Autophagy in Plants--What's New on the Menu?
  Journal
Trends Plant Sci 21:134-44 (2016)
DOI:10.1016/j.tplants.2015.10.008
Reference
  Authors
Yang X, Bassham DC
  Title
New Insight into the Mechanism and Function of Autophagy in Plant Cells.
  Journal
Int Rev Cell Mol Biol 320:1-40 (2015)
DOI:10.1016/bs.ircmb.2015.07.005
KO pathway
ko04136   
LinkDB

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