KEGG   PATHWAY: ddi04141
Entry
ddi04141                    Pathway                                
Name
Protein processing in endoplasmic reticulum - Dictyostelium discoideum (cellular slime mold)
Description
The endoplasmic reticulum (ER) is a subcellular organelle where proteins are folded with the help of lumenal chaperones. Newly synthesized peptides enter the ER via the sec61 pore and are glycosylated. Correctly folded proteins are packaged into transport vesicles that shuttle them to the Golgi complex. Misfolded proteins are retained within the ER lumen in complex with molecular chaperones. Proteins that are terminally misfolded bind to BiP and are directed toward degradation through the proteasome in a process called ER-associated degradation (ERAD). Accumulation of misfolded proteins in the ER causes ER stress and activates a signaling pathway called the unfolded protein response (UPR). In certain severe situations, however, the protective mechanisms activated by the UPR are not sufficient to restore normal ER function and cells die by apoptosis.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
ddi04141  Protein processing in endoplasmic reticulum
ddi04141

Other DBs
GO: 0030433 0034976
Organism
Dictyostelium discoideum (cellular slime mold) [GN:ddi]
Gene
DDB_G0267384  culB; cullin B [KO:K03347]
DDB_G0267400  hspD; heat shock protein Hsp90 family protein [KO:K04079]
DDB_G0267452  sonA; UAS domain-containing protein [KO:K04523]
DDB_G0267524  ssr3; translocon-associated protein TRAP gamma subunit [KO:K13251]
DDB_G0267650  ireA; IRE family protein kinase [KO:K08852] [EC:2.7.11.1 3.1.26.-]
DDB_G0268168  [KO:K01456] [EC:3.5.1.52]
DDB_G0268642  [KO:K08860] [EC:2.7.11.1]
DDB_G0268754  [KO:K01230] [EC:3.2.1.113]
DDB_G0269144  hspB; heat shock cognate protein Hsc70-1 [KO:K03283]
DDB_G0269154  modA; alpha-glucosidase II [KO:K05546] [EC:3.2.1.207]
DDB_G0269230  fpaA; cytosolic glycoprotein FP21 [KO:K03094]
DDB_G0270992  sec31; WD40 repeat-containing protein [KO:K14005]
DDB_G0271120  [KO:K08288]
DDB_G0271122  ufd1; ubiquitin fusion degradation protein UFD1 family protein [KO:K14016]
DDB_G0271144  cnxA; hypothetical protein [KO:K08054]
DDB_G0271346  yod1; C2H2-type zinc finger-containing protein [KO:K13719] [EC:3.1.2.-]
DDB_G0271726  [KO:K10575] [EC:2.3.2.23]
DDB_G0271862  eIF2s1; eIF-2 alpha [KO:K03237]
DDB_G0271968  [KO:K10080]
DDB_G0272296  sarA; ARF/SAR superfamily protein [KO:K07953] [EC:3.6.5.-]
DDB_G0273093  [KO:K09486]
DDB_G0273249  hspE-1; heat shock cognate protein Hsc70-2 [KO:K03283]
DDB_G0273251  fpaB-1; cytosolic glycoprotein FP21 [KO:K03094]
DDB_G0273615  fpaB-2; cytosolic glycoprotein FP21 [KO:K03094]
DDB_G0273623  hspE-2; heat shock cognate protein Hsc70-2 [KO:K03283]
DDB_G0273813  [KO:K09486]
DDB_G0274103  ggtA; UDP-glucose glycoprotein alpha-glucosyltransferase [KO:K11718] [EC:2.4.1.-]
DDB_G0275025  [KO:K09584] [EC:5.3.4.1]
DDB_G0275939  mbtps2; membrane-bound transcription factor peptidase, site 2 [KO:K07765] [EC:3.4.24.85]
DDB_G0276141  pdi1; protein disulfide isomerase [KO:K09584] [EC:5.3.4.1]
DDB_G0276445  [KO:K09490] [EC:3.6.4.10]
DDB_G0277051  [KO:K10085]
DDB_G0277797  sec24l; hypothetical protein [KO:K14007]
DDB_G0278117  sec61b; protein transport protein SEC61 beta subunit [KO:K09481]
DDB_G0278477  sarB; ARF/SAR superfamily protein [KO:K07953] [EC:3.6.5.-]
DDB_G0278885  sec61a; SecY family protein [KO:K10956]
DDB_G0278991  culE; cullin E [KO:K03347]
DDB_G0279173  [KO:K26501]
DDB_G0279345  amfr; hypothetical protein [KO:K10636] [EC:2.3.2.36]
DDB_G0280037  ddj1; heat shock protein [KO:K09503]
DDB_G0280057  grp94; heat shock protein Hsp90 family protein [KO:K09487]
DDB_G0280145  [KO:K01228] [EC:3.2.1.106]
DDB_G0280313  ssr2; translocon-associated protein subunit beta [KO:K13250]
DDB_G0280347  [KO:K04555] [EC:2.3.2.23]
DDB_G0281255  sec24; hypothetical protein [KO:K14007]
DDB_G0281369  [KO:K10578] [EC:2.3.2.23]
DDB_G0281985  sec23; hypothetical protein [KO:K14006]
DDB_G0282397  mbtps1; membrane-bound transcription factor peptidase, site 1 [KO:K08653] [EC:3.4.21.112]
DDB_G0283497  ssr1; translocon-associated protein TRAP alpha subunit [KO:K13249]
DDB_G0283539  crtA; hypothetical protein [KO:K08057]
DDB_G0284391  [KO:K01230] [EC:3.2.1.113]
DDB_G0284393  [KO:K01230] [EC:3.2.1.113]
DDB_G0284395  [KO:K01230] [EC:3.2.1.113]
DDB_G0284643  [KO:K09562]
DDB_G0285131  derl2; hypothetical protein [KO:K13989]
DDB_G0285159  stt3; dolichyl-diphosphooligosaccharide-protein glycotransferase [KO:K07151] [EC:2.4.99.18]
DDB_G0285333  [KO:K10666] [EC:2.3.2.27]
DDB_G0285537  ost3; dolichyl-diphosphooligosaccharide-protein glycotransferase [KO:K19478]
DDB_G0285705  [KO:K10661] [EC:2.3.2.27]
DDB_G0285709  [KO:K03283]
DDB_G0286131  [KO:K09540]
DDB_G0286167  [KO:K14003]
DDB_G0286251  dnajc3; DNAJ heat shock N-terminal domain-containing protein [KO:K09523]
DDB_G0286357  rcbA; repC-binding protein A [KO:K10839]
DDB_G0286511  [KO:K04554] [EC:2.3.2.23]
DDB_G0286759  [KO:K28202]
DDB_G0287629  rbx1; hypothetical protein [KO:K03868] [EC:2.3.2.32]
DDB_G0287777  sec61g; protein transport protein SEC61 gamma subunit [KO:K07342]
DDB_G0287847  [KO:K10601] [EC:2.3.2.27]
DDB_G0288065  cdcD; CDC48 family AAA ATPase [KO:K13525]
DDB_G0288833  derl1; hypothetical protein [KO:K13989]
DDB_G0288849  [KO:K10950] [EC:1.8.4.-]
DDB_G0289479  swp1; dolichyl-diphosphooligosaccharide-protein glycotransferase [KO:K12667]
DDB_G0290227  npl4; nuclear protein localization 4 [KO:K14015]
DDB_G0290547  [KO:K06689] [EC:2.3.2.23]
DDB_G0291003  [KO:K14018]
DDB_G0291049  ost2; dolichyl-diphosphooligosaccharide-protein glycotransferase [KO:K12668]
DDB_G0291434  pdi2; protein disulfide isomerase [KO:K09580] [EC:5.3.4.1]
DDB_G0291780  wbp1; dolichyl-diphosphooligosaccharide-protein glycotransferase [KO:K12670]
DDB_G0291972  culA; cullin A [KO:K03347]
DDB_G0292052  sec13; WD40 repeat-containing protein [KO:K14004]
DDB_G0292264  nosA; U box domain-containing protein [KO:K10597] [EC:2.3.2.27]
DDB_G0292918  [KO:K01230] [EC:3.2.1.113]
DDB_G0293224  ost1; dolichyl-diphosphooligosaccharide-protein glycotransferase [KO:K12666]
DDB_G0293498  [KO:K14012]
DDB_G0293674  [KO:K03283]
DDB_G0293678  [KO:K03283]
DDB_G0294380  [KO:K04554] [EC:2.3.2.23]
DDB_G0295811  [KO:K13984] [EC:5.3.4.1]
Compound
C00076  Calcium cation
G00009  
G00010  
G00011  
G00012  
G10694  
Reference
  Authors
Naidoo N
  Title
ER and aging-Protein folding and the ER stress response.
  Journal
Ageing Res Rev 8:150-9 (2009)
DOI:10.1016/j.arr.2009.03.001
Reference
  Authors
Malhotra JD, Kaufman RJ
  Title
The endoplasmic reticulum and the unfolded protein response.
  Journal
Semin Cell Dev Biol 18:716-31 (2007)
DOI:10.1016/j.semcdb.2007.09.003
Reference
  Authors
Maattanen P, Gehring K, Bergeron JJ, Thomas DY
  Title
Protein quality control in the ER: the recognition of misfolded proteins.
  Journal
Semin Cell Dev Biol 21:500-11 (2010)
DOI:10.1016/j.semcdb.2010.03.006
Reference
  Authors
Stolz A, Wolf DH
  Title
Endoplasmic reticulum associated protein degradation: a chaperone assisted journey to hell.
  Journal
Biochim Biophys Acta 1803:694-705 (2010)
DOI:10.1016/j.bbamcr.2010.02.005
Reference
  Authors
Dejgaard K, Theberge JF, Heath-Engel H, Chevet E, Tremblay ML, Thomas DY
  Title
Organization of the Sec61 translocon, studied by high resolution native electrophoresis.
  Journal
J Proteome Res 9:1763-71 (2010)
DOI:10.1021/pr900900x
Related
pathway
ddi00510  N-Glycan biosynthesis
ddi03050  Proteasome
ddi03060  Protein export
KO pathway
ko04141   

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