Entry
Name
Autophagy - animal - Mus musculus (house mouse)
Description
Autophagy (or macroautophagy) is a cellular catabolic pathway involving in protein degradation, organelle turnover, and non-selective breakdown of cytoplasmic components, which is evolutionarily conserved among eukaryotes and exquisitely regulated. This progress initiates with production of the autophagosome, a double-membrane intracellular structure of reticular origin that engulfs cytoplasmic contents and ultimately fuses with lysosomes for cargo degradation. Autophagy is regulated in response to extra- or intracellular stress and signals such as starvation, growth factor deprivation and ER stress. Constitutive level of autophagy plays an important role in cellular homeostasis and maintains quality control of essential cellular components.
Class
Cellular Processes; Transport and catabolism
BRITE hierarchy
Pathway map
Ortholog table
Other DBs
Organism
Mus musculus (house mouse) [GN:
mmu ]
Gene
18706 Pik3ca; phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha [KO:K00922 ] [EC:2.7.1.153 ]
18707 Pik3cd; phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta [KO:K00922 ] [EC:2.7.1.153 ]
74769 Pik3cb; phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta [KO:K00922 ] [EC:2.7.1.153 ]
18709 Pik3r2; phosphoinositide-3-kinase regulatory subunit 2 [KO:K02649 ]
18708 Pik3r1; phosphoinositide-3-kinase regulatory subunit 1 [KO:K02649 ]
18710 Pik3r3; phosphoinositide-3-kinase regulatory subunit 3 [KO:K02649 ]
15461 Hras; Harvey rat sarcoma virus oncogene [KO:K02833 ]
16653 Kras; Kirsten rat sarcoma viral oncogene homolog [KO:K07827 ]
20130 Rras; related RAS viral (r-ras) oncogene [KO:K07829 ]
66922 Rras2; related RAS viral (r-ras) oncogene 2 [KO:K07830 ]
15251 Hif1a; hypoxia inducible factor 1, alpha subunit [KO:K08268 ]
74747 Ddit4; DNA-damage-inducible transcript 4 [KO:K08270 ]
12176 Bnip3; BCL2/adenovirus E1B interacting protein 3 [KO:K15464 ]
74370 Rptor; regulatory associated protein of MTOR, complex 1 [KO:K07204 ]
97998 Deptor; DEP domain containing MTOR-interacting protein [KO:K20402 ]
56716 Mlst8; MTOR associated protein, LST8 homolog (S. cerevisiae) [KO:K08266 ]
18518 Igbp1; immunoglobulin (CD79A) binding protein 1 [KO:K17606 ]
50540 Igbp1b; immunoglobulin (CD79A) binding protein 1b [KO:K17606 ]
19052 Ppp2ca; protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform [KO:K04382 ] [EC:3.1.3.16 ]
19053 Ppp2cb; protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform [KO:K04382 ] [EC:3.1.3.16 ]
52639 Wipi1; WD repeat domain, phosphoinositide interacting 1 [KO:K17908 ]
74781 Wipi2; WD repeat domain, phosphoinositide interacting 2 [KO:K17908 ]
237782 Smcr8; Smith-Magenis syndrome chromosome region, candidate 8 homolog (human) [KO:K23611 ]
73205 C9orf72; C9orf72, member of C9orf72-SMCR8 complex [KO:K23609 ]
17274 Rab8a; RAB8A, member RAS oncogene family [KO:K07901 ]
67790 Rab39b; RAB39B, member RAS oncogene family [KO:K07925 ]
21353 Tank; TRAF family member-associated Nf-kappa B activator [KO:K12650 ]
19324 Rab1a; RAB1A, member RAS oncogene family [KO:K07874 ]
12015 Bad; BCL2-associated agonist of cell death [KO:K02158 ]
68728 Trp53inp2; transformation related protein 53 inducible nuclear protein 2 [KO:K21247 ]
78610 Uvrag; UV radiation resistance associated gene [KO:K21249 ]
54673 Sh3glb1; SH3-domain GRB2-like B1 (endophilin) [KO:K11248 ]
100502698 Rubcn; RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein [KO:K19330 ]
16438 Itpr1; inositol 1,4,5-trisphosphate receptor 1 [KO:K04958 ]
13666 Eif2ak3; eukaryotic translation initiation factor 2 alpha kinase 3 [KO:K08860 ] [EC:2.7.11.1 ]
27103 Eif2ak4; eukaryotic translation initiation factor 2 alpha kinase 4 [KO:K16196 ] [EC:2.7.11.1 ]
13665 Eif2s1; eukaryotic translation initiation factor 2, subunit 1 alpha [KO:K03237 ]
217695 Zfyve1; zinc finger, FYVE domain containing 1 [KO:K17603 ]
12633 Cflar; CASP8 and FADD-like apoptosis regulator [KO:K04724 ]
19338 Rab33b; RAB33B, member RAS oncogene family [KO:K07920 ]
57436 Gabarapl1; GABA type A receptor associated protein like 1 [KO:K08341 ]
56486 Gabarap; gamma-aminobutyric acid receptor associated protein [KO:K08341 ]
93739 Gabarapl2; GABA type A receptor associated protein like 2 [KO:K08341 ]
66734 Map1lc3a; microtubule-associated protein 1 light chain 3 alpha [KO:K10435 ]
67443 Map1lc3b; microtubule-associated protein 1 light chain 3 beta [KO:K10435 ]
66615 Atg4b; autophagy related 4B, cysteine peptidase [KO:K08342 ] [EC:3.4.22.-]
235040 Atg4d; autophagy related 4D, cysteine peptidase [KO:K08342 ] [EC:3.4.22.-]
242557 Atg4c; autophagy related 4C, cysteine peptidase [KO:K08342 ] [EC:3.4.22.-]
666468 Atg4a; autophagy related 4A, cysteine peptidase [KO:K08342 ] [EC:3.4.22.-]
76815 Calcoco2; calcium binding and coiled-coil domain 2 [KO:K21348 ]
52440 Tax1bp1; Tax1 (human T cell leukemia virus type I) binding protein 1 [KO:K21347 ]
72145 Wdfy3; WD repeat and FYVE domain containing 3 [KO:K22262 ]
22186 Uba52; ubiquitin A-52 residue ribosomal protein fusion product 1 [KO:K02927 ]
67474 Snap29; synaptosomal-associated protein 29 [KO:K08509 ]
22320 Vamp8; vesicle-associated membrane protein 8 [KO:K08512 ]
56418 Ykt6; YKT6 v-SNARE homolog (S. cerevisiae) [KO:K08516 ]
100502841 Epg5; ectopic P-granules 5 autophagy tethering factor [KO:K23883 ]
353047 Plekhm1; pleckstrin homology domain containing, family M (with RUN domain) member 1 [KO:K23282 ]
71732 Vps11; VPS11, CORVET/HOPS core subunit [KO:K20179 ]
80743 Vps16; VSP16 CORVET/HOPS core subunit [KO:K20180 ]
77573 Vps33a; VPS33A CORVET/HOPS core subunit [KO:K20182 ]
70231 Gorasp2; golgi reassembly stacking protein 2 [KO:K26797 ]
74498 Gorasp1; golgi reassembly stacking protein 1 [KO:K26797 ]
19349 Rab7; RAB7, member RAS oncogene family [KO:K07897 ]
16783 Lamp1; lysosomal-associated membrane protein 1 [KO:K06528 ]
16784 Lamp2; lysosomal-associated membrane protein 2 [KO:K06528 ]
Compound
C00350 Phosphatidylethanolamine
C01194 1-Phosphatidyl-D-myo-inositol
C04549 1-Phosphatidyl-1D-myo-inositol 3-phosphate
C05981 Phosphatidylinositol-3,4,5-trisphosphate
Reference
Authors
Meijer AJ, Codogno P.
Title
Regulation and role of autophagy in mammalian cells.
Journal
Reference
Authors
Deretic V.
Title
Autophagy in innate and adaptive immunity.
Journal
Reference
Authors
Levine B, Yuan J.
Title
Autophagy in cell death: an innocent convict?
Journal
Reference
Authors
Tanida I, Ueno T, Kominami E.
Title
LC3 conjugation system in mammalian autophagy.
Journal
Reference
Authors
Lum JJ, DeBerardinis RJ, Thompson CB.
Title
Autophagy in metazoans: cell survival in the land of plenty.
Journal
Reference
Authors
Reggiori F, Klionsky DJ.
Title
Autophagosomes: biogenesis from scratch?
Journal
Reference
Authors
Klionsky DJ, Emr SD.
Title
Autophagy as a regulated pathway of cellular degradation.
Journal
Reference
Authors
Bechet D, Tassa A, Taillandier D, Combaret L, Attaix D.
Title
Lysosomal proteolysis in skeletal muscle.
Journal
Reference
Authors
He C, Klionsky DJ
Title
Regulation mechanisms and signaling pathways of autophagy.
Journal
Reference
Authors
Yang Z, Klionsky DJ
Title
An overview of the molecular mechanism of autophagy.
Journal
Reference
Authors
Yang Z, Klionsky DJ
Title
Mammalian autophagy: core molecular machinery and signaling regulation.
Journal
Reference
Authors
Chen Y, Klionsky DJ
Title
The regulation of autophagy - unanswered questions.
Journal
Reference
Authors
Mizushima N, Yoshimori T, Ohsumi Y
Title
The role of Atg proteins in autophagosome formation.
Journal
Reference
Authors
Russell RC, Yuan HX, Guan KL
Title
Autophagy regulation by nutrient signaling.
Journal
Reference
Authors
Noda NN, Fujioka Y
Title
Atg1 family kinases in autophagy initiation.
Journal
Related pathway
mmu04141 Protein processing in endoplasmic reticulum
KO pathway
LinkDB
All DBs