KEGG   PATHWAY: ocu04144
Entry
ocu04144                    Pathway                                
Name
Endocytosis - Oryctolagus cuniculus (rabbit)
Description
Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
Class
Cellular Processes; Transport and catabolism
Pathway map
ocu04144  Endocytosis
ocu04144

Other DBs
GO: 0006897
Organism
Oryctolagus cuniculus (rabbit) [GN:ocu]
Gene
100008682  RAB7A; ras-related protein Rab-7a [KO:K07897]
100008758  [KO:K12484]
100008790  [KO:K18584]
100008806  [KO:K04361] [EC:2.7.10.1]
100008837  CAV1; caveolin-1 [KO:K06278]
100008949  ACAP2; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 [KO:K12489]
100008965  [KO:K04393]
100009072  RAB11A; ras-related protein Rab-11A [KO:K07904]
100009086  LDLR; low-density lipoprotein receptor precursor [KO:K12473]
100009235  [KO:K04439]
100009417  FGFR2; fibroblast growth factor receptor 2 precursor [KO:K05093] [EC:2.7.10.1]
100009418  [KO:K10591] [EC:2.3.2.26]
100009538  PRKCZ; protein kinase C zeta type [KO:K18952] [EC:2.7.11.13]
100009573  [KO:K06564]
100101579  CCR5; C-C chemokine receptor type 5 [KO:K04180]
100126563  CAV2; caveolin-2 [KO:K12958]
100126568  CAPZA2; F-actin-capping protein subunit alpha-2 [KO:K10364]
100144342  [KO:K05087] [EC:2.7.10.1]
100328622  CXCR1; C-X-C chemokine receptor type 1 [KO:K04175]
100328627  CXCR2; C-X-C chemokine receptor type 2 [KO:K05050]
100328699  SNX3; sorting nexin-3 [KO:K17918]
100328967  [KO:K06751]
100338113  [KO:K05068]
100338152  [KO:K12196]
100338160  [KO:K03283]
100338178  [KO:K04646]
100338505  [KO:K12192]
100338768  [KO:K17920]
100338794  [KO:K12485]
100338822  [KO:K06751]
100338826  [KO:K12486]
100338927  [KO:K17917]
100339132  [KO:K12492]
100339213  [KO:K17260]
100339597  [KO:K10396] [EC:5.6.1.3]
100339661  [KO:K01115] [EC:3.1.4.4]
100339821  [KO:K06751]
100340140  [KO:K12196]
100340179  [KO:K12494]
100340347  [KO:K12190]
100340544  [KO:K12471]
100340661  [KO:K04513]
100340681  [KO:K12494]
100340798  [KO:K12191]
100341085  WASHC3; WASH complex subunit 3 isoform X1 [KO:K18463]
100341127  [KO:K12482]
100341137  [KO:K07879]
100341202  [KO:K18466]
100341204  [KO:K04439]
100341403  [KO:K18439]
100341540  [KO:K12200]
100341599  [KO:K05704] [EC:2.7.10.2]
100341862  [KO:K07939]
100341917  [KO:K13649]
100341977  [KO:K12495]
100342213  [KO:K12474]
100342424  FOLR1; folate receptor alpha isoform X1 [KO:K13649]
100342561  [KO:K06503]
100342595  [KO:K04707] [EC:2.3.2.27]
100342999  [KO:K12959]
100343006  [KO:K04363] [EC:2.7.10.1]
100343113  [KO:K12197]
100343190  [KO:K03175] [EC:2.3.2.27]
100343368  [KO:K04513]
100343429  [KO:K12183]
100343468  [KO:K12562]
100343474  [KO:K18584]
100343496  [KO:K18462]
100343501  [KO:K07937]
100343559  [KO:K07940]
100343680  [KO:K04513]
100343960  [KO:K12196]
100344135  [KO:K12476]
100344254  [KO:K18443]
100344335  TGFBR2; TGF-beta receptor type-2 precursor [KO:K04388] [EC:2.7.11.30]
100344359  [KO:K05754]
100344482  [KO:K04393]
100344961  [KO:K12491]
100345030  [KO:K04237]
100345109  [KO:K12188]
100345151  [KO:K18442]
100345191  [KO:K12477]
100345211  [KO:K12198]
100345396  [KO:K21269]
100345562  [KO:K18441]
100345580  [KO:K12478]
100345812  [KO:K04674] [EC:2.7.11.30]
100345833  [KO:K19367]
100345872  [KO:K07941]
100345904  [KO:K15053]
100345952  [KO:K10365]
100346017  WASHC1; WASH complex subunit 1 [KO:K18461]
100346056  [KO:K17848]
100346128  [KO:K04705]
100346189  [KO:K04189]
100346195  [KO:K12481]
100346303  [KO:K23605]
100346468  [KO:K01528] [EC:3.6.5.5]
100346507  SH3GL2; endophilin-A1 [KO:K11247]
100346564  [KO:K12471]
100346759  [KO:K05757]
100346808  [KO:K12488]
100346856  [KO:K04513]
100347007  [KO:K11825]
100347020  [KO:K05757]
100347053  [KO:K23612]
100347127  [KO:K12185]
100347278  [KO:K18466]
100347474  [KO:K24782]
100347637  [KO:K12185]
100347690  [KO:K17918]
100347771  [KO:K05737]
100347889  [KO:K12194]
100347928  [KO:K12482]
100347994  [KO:K12493]
100348021  [KO:K07889]
100348106  [KO:K12487]
100348141  [KO:K10396] [EC:5.6.1.3]
100348306  [KO:K07888]
100348451  [KO:K23484]
100348555  [KO:K07938]
100348584  [KO:K06069] [EC:2.7.11.13]
100348873  [KO:K03283]
100348967  [KO:K04513]
100348995  [KO:K06751]
100349085  [KO:K06751]
100349247  [KO:K06751]
100349249  [KO:K12486]
100349335  [KO:K10364]
100349388  [KO:K12494]
100349480  [KO:K11826]
100349557  [KO:K06093]
100349708  [KO:K00910] [EC:2.7.11.15]
100349753  [KO:K12197]
100349757  [KO:K06751]
100349763  [KO:K12493]
100349913  [KO:K05758]
100350071  [KO:K11981] [EC:2.3.2.27]
100350140  [KO:K18441]
100350456  [KO:K04644]
100350478  [KO:K05633] [EC:2.3.2.26]
100350578  [KO:K11826]
100350579  [KO:K00909] [EC:2.7.11.14]
100350629  [KO:K12184]
100350663  [KO:K12472]
100350899  [KO:K06093]
100350923  [KO:K07887]
100350969  [KO:K07891]
100350986  [KO:K07897]
100350994  [KO:K19475]
100351063  [KO:K11866] [EC:3.4.19.12]
100351064  [KO:K04645]
100351193  [KO:K12480]
100351202  [KO:K18468]
100351262  [KO:K12491]
100351322  [KO:K04705]
100351366  [KO:K04646]
100351382  [KO:K10054] [EC:2.3.2.-]
100351436  [KO:K11839] [EC:3.4.19.12]
100351551  [KO:K08291] [EC:2.7.11.16]
100351722  [KO:K12493]
100351848  [KO:K12485]
100351873  [KO:K10364]
100352012  [KO:K12199]
100352021  [KO:K17919]
100352233  [KO:K18440]
100352323  [KO:K19476]
100352421  [KO:K11248]
100352462  [KO:K12472]
100352505  [KO:K12475]
100352582  [KO:K12495]
100352693  [KO:K10396] [EC:5.6.1.3]
100353099  [KO:K13305] [EC:2.3.2.26]
100353321  [KO:K06093]
100353378  [KO:K11247]
100353534  [KO:K03283]
100353573  [KO:K04678] [EC:2.3.2.26]
100353577  [KO:K12488]
100353775  [KO:K12495]
100353778  [KO:K07891]
100353848  [KO:K07939]
100354037  [KO:K03283]
100354066  [KO:K07876]
100354104  [KO:K17920]
100354264  [KO:K12490]
100354334  [KO:K07937]
100354393  [KO:K13712] [EC:2.7.1.68]
100354435  [KO:K03283]
100354464  [KO:K19368]
100354611  [KO:K06751]
100355195  [KO:K12562]
100355275  [KO:K05095] [EC:2.7.10.1]
100355281  WASHC4; WASH complex subunit 4 isoform X1 [KO:K18465]
100355357  [KO:K07903]
100355380  [KO:K06751]
100355469  [KO:K22517] [EC:2.3.2.27]
100355560  [KO:K09526]
100355765  [KO:K12494]
100355833  [KO:K19475]
100355909  [KO:K01528] [EC:3.6.5.5]
100356064  [KO:K12484]
100356250  [KO:K04513]
100356255  [KO:K00889] [EC:2.7.1.68]
100356276  WASHC5; WASH complex subunit 5 isoform X1 [KO:K18464]
100356371  RLA-A3; MHC class I antigen-like precursor [KO:K06751]
100356572  [KO:K03283]
100356696  [KO:K05632] [EC:2.3.2.26]
100356819  [KO:K04679]
100356920  [KO:K12185]
100357065  [KO:K07937]
100357125  [KO:K12484]
100357306  [KO:K17920]
100357607  [KO:K05756]
100357639  [KO:K08291] [EC:2.7.11.16]
100357809  [KO:K12193]
100357864  [KO:K12470]
100357978  [KO:K12483]
100358093  [KO:K10364]
100358121  [KO:K04678] [EC:2.3.2.26]
100358123  [KO:K18467]
100358128  SPART; spartin [KO:K19366]
100358165  [KO:K04679]
100358285  [KO:K19367]
100358336  [KO:K18584]
100358489  [KO:K05068]
100358527  [KO:K19475]
100358563  [KO:K07905]
100358592  [KO:K17917]
100358641  [KO:K19475]
100359137  [KO:K04500]
100359236  [KO:K12489]
100359243  [KO:K12186]
100359279  [KO:K12488]
103345024  [KO:K12189]
103345045  [KO:K00910] [EC:2.7.11.15]
103345363  [KO:K07901]
103345506  [KO:K05755]
103345727  [KO:K11827]
103346134  [KO:K18441]
103346218  [KO:K05069]
103346289  [KO:K05754]
103347003  [KO:K12182]
103347267  [KO:K11824]
103347371  [KO:K00909] [EC:2.7.11.14]
103347442  [KO:K12493]
103348163  [KO:K10365]
103350059  [KO:K00889] [EC:2.7.1.68]
103350066  [KO:K12479]
103351438  [KO:K08291] [EC:2.7.11.16]
103351479  [KO:K01115] [EC:3.1.4.4]
103351862  [KO:K05070]
103352390  [KO:K18442]
108176538  [KO:K01528] [EC:3.6.5.5]
127482580  [KO:K12194]
127482754  [KO:K18441]
127485201  [KO:K12471]
127485863  [KO:K05094] [EC:2.7.10.1]
127485982  [KO:K05755]
127485993  [KO:K00889] [EC:2.7.1.68]
127486509  [KO:K12195]
127486605  [KO:K02833]
127487395  [KO:K11981] [EC:2.3.2.27]
127487421  [KO:K07888]
127488183  [KO:K11248]
127488369  [KO:K12469]
127488889  [KO:K03283]
127488890  [KO:K03283]
127489134  [KO:K12196]
127489269  [KO:K12489]
127489660  [KO:K04513]
127492411  [KO:K12197]
127493068  [KO:K03283]
127493716  [KO:K12491]
Compound
C00035  GDP
C00044  GTP
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
C04637  1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate
C05981  Phosphatidylinositol-3,4,5-trisphosphate
C11556  1-Phosphatidyl-1D-myo-inositol 3,5-bisphosphate
Reference
  Authors
Acconcia F, Sigismund S, Polo S
  Title
Ubiquitin in trafficking: the network at work.
  Journal
Exp Cell Res 315:1610-8 (2009)
DOI:10.1016/j.yexcr.2008.10.014
Reference
  Authors
Donaldson JG, Porat-Shliom N, Cohen LA
  Title
Clathrin-independent endocytosis: a unique platform for cell signaling and PM remodeling.
  Journal
Cell Signal 21:1-6 (2009)
DOI:10.1016/j.cellsig.2008.06.020
Reference
  Authors
Sorkin A
  Title
Cargo recognition during clathrin-mediated endocytosis: a team effort.
  Journal
Curr Opin Cell Biol 16:392-9 (2004)
DOI:10.1016/j.ceb.2004.06.001
Reference
  Authors
Raiborg C, Stenmark H
  Title
The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins.
  Journal
Nature 458:445-52 (2009)
DOI:10.1038/nature07961
Reference
  Authors
Scita G, Di Fiore PP
  Title
The endocytic matrix.
  Journal
Nature 463:464-73 (2010)
DOI:10.1038/nature08910
Reference
  Authors
Le Roy C, Wrana JL
  Title
Clathrin- and non-clathrin-mediated endocytic regulation of cell signalling.
  Journal
Nat Rev Mol Cell Biol 6:112-26 (2005)
DOI:10.1038/nrm1571
Reference
  Authors
Jovic M, Sharma M, Rahajeng J, Caplan S
  Title
The early endosome: a busy sorting station for proteins at the crossroads.
  Journal
Histol Histopathol 25:99-112 (2010)
DOI:10.14670/HH-25.99
Reference
  Authors
Pietiainen VM, Marjomaki V, Heino J, Hyypia T
  Title
Viral entry, lipid rafts and caveosomes.
  Journal
Ann Med 37:394-403 (2005)
DOI:10.1080/07853890510011976
Reference
  Authors
Grant BD, Donaldson JG
  Title
Pathways and mechanisms of endocytic recycling.
  Journal
Nat Rev Mol Cell Biol 10:597-608 (2009)
DOI:10.1038/nrm2755
Reference
  Authors
Cullen PJ, Korswagen HC
  Title
Sorting nexins provide diversity for retromer-dependent trafficking events.
  Journal
Nat Cell Biol 14:29-37 (2012)
DOI:10.1038/ncb2374
Related
pathway
ocu04060  Cytokine-cytokine receptor interaction
ocu04070  Phosphatidylinositol signaling system
ocu04130  SNARE interactions in vesicular transport
ocu04142  Lysosome
ocu04350  TGF-beta signaling pathway
KO pathway
ko04144   

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