KEGG   PATHWAY: sce03008
Entry
sce03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Saccharomyces cerevisiae (budding yeast)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
sce03008  Ribosome biogenesis in eukaryotes
sce03008

Organism
Saccharomyces cerevisiae (budding yeast) [GN:sce]
Gene
YAL033W  POP5; RNA-binding protein POP5 [KO:K03537] [EC:3.1.26.5]
YBL018C  POP8; ribonuclease P [KO:K14528] [EC:3.1.26.5]
YBR167C  POP7; ribonuclease P/MRP protein subunit POP7 [KO:K14526] [EC:3.1.26.5]
YBR257W  POP4; RNase P/RNase MRP complex subunit [KO:K03538] [EC:3.1.26.5]
YCL031C  RRP7; Rrp7p [KO:K14545]
YCR057C  PWP2; snoRNA-binding rRNA-processing protein PWP2 [KO:K14558]
YDL014W  NOP1; rRNA methyltransferase NOP1 [KO:K14563] [EC:2.1.1.-]
YDL166C  FAP7; nucleoside-triphosphatase [KO:K18532] [EC:2.7.4.3]
YDL208W  NHP2; snoRNA-binding protein NHP2 [KO:K11129]
YDR324C  UTP4; Utp4p [KO:K14548]
YDR339C  FCF1; rRNA-processing protein FCF1 [KO:K14566]
YDR398W  UTP5; Utp5p [KO:K14546]
YDR449C  UTP6; snoRNA-binding rRNA-processing protein UTP6 [KO:K14557]
YDR478W  SNM1; Snm1p [KO:K14531]
YEL026W  SNU13; RNA binding protein SNU13 [KO:K12845]
YER006W  NUG1; RNA-binding GTPase NUG1 [KO:K14538]
YGL019W  CKB1; casein kinase 2 regulatory subunit CKB1 [KO:K03115]
YGL099W  LSG1; putative GTPase LSG1 [KO:K14539] [EC:3.6.1.-]
YGL173C  XRN1; chromatin-binding exonuclease XRN1 [KO:K12618] [EC:3.1.13.-]
YGR030C  POP6; ribonuclease P/MRP protein subunit POP6 [KO:K14524] [EC:3.1.26.5]
YGR090W  UTP22; rRNA-processing protein UTP22 [KO:K14544]
YGR128C  UTP8; Utp8p [KO:K14547]
YGR218W  CRM1; exportin CRM1 [KO:K14290]
YGR276C  RNH70; Rnh70p [KO:K14570] [EC:3.1.-.-]
YHR062C  RPP1; RNA-binding RNA processing protein RPP1 [KO:K03539] [EC:3.1.26.5]
YHR072W-A  NOP10; snoRNP complex protein NOP10 [KO:K11130]
YHR089C  GAR1; H/ACA snoRNP pseudouridylase subunit GAR1 [KO:K11128]
YHR148W  IMP3; snoRNA-binding rRNA-processing protein IMP3 [KO:K14560]
YHR170W  NMD3; ribosome-binding protein NMD3 [KO:K07562]
YHR196W  UTP9; Utp9p [KO:K14551]
YIL035C  CKA1; casein kinase 2 catalytic subunit CKA1 [KO:K03097] [EC:2.7.11.1]
YJL069C  UTP18; Utp18p [KO:K14553]
YJL109C  UTP10; snoRNA-binding rRNA-processing protein UTP10 [KO:K14550]
YJR002W  MPP10; rRNA-processing protein MPP10 [KO:K14559]
YKL186C  MTR2; Mtr2p [KO:K14543]
YLL034C  RIX7; putative AAA family ATPase RIX7 [KO:K14571]
YLR022C  SDO1; guanine nucleotide exchange factor SDO1 [KO:K14574]
YLR059C  REX2; Rex2p [KO:K13288] [EC:3.1.-.-]
YLR106C  REA1; AAA family ATPase midasin [KO:K14572]
YLR107W  REX3; RNA exonuclease [KO:K14570] [EC:3.1.-.-]
YLR129W  DIP2; snoRNA-binding rRNA-processing protein DIP2 [KO:K14556]
YLR145W  RMP1; Rmp1p [KO:K14532]
YLR175W  CBF5; pseudouridine synthase CBF5 [KO:K11131] [EC:5.4.99.-]
YLR186W  EMG1; 18S rRNA pseudouridine methyltransferase [KO:K14568] [EC:2.1.1.260]
YLR197W  NOP56; snoRNP complex protein NOP56 [KO:K14564]
YLR222C  UTP13; Utp13p [KO:K14555]
YLR293C  GSP1; Ran GTPase GSP1 [KO:K07936]
YLR397C  AFG2; AAA family ATPase AFG2 [KO:K14575]
YLR409C  UTP21; rRNA-processing protein UTP21 [KO:K14554]
YML093W  UTP14; Utp14p [KO:K14567]
YMR093W  UTP15; snoRNA-binding rRNA-processing protein UTP15 [KO:K14549]
YMR239C  RNT1; ribonuclease III [KO:K03685] [EC:3.1.26.3]
YNCI0012  ICR1; ICR1 [KO:K01982]
YNCL0012C  RDN25-1; 25S ribosomal RNA [KO:K01982]
YNCL0016C  RDN18-1; 18S ribosomal RNA [KO:K01979]
YNCL0018W  RDN5-1; 5S ribosomal RNA [KO:K01981]
YNCL0021C  RDN25-2; 25S ribosomal RNA [KO:K01982]
YNCL0025C  RDN18-2; 18S ribosomal RNA [KO:K01979]
YNCL0027W  RDN5-2; 5S ribosomal RNA [KO:K01981]
YNCL0028W  RDN5-3; 5S ribosomal RNA [KO:K01981]
YNCL0029W  RDN5-4; 5S ribosomal RNA [KO:K01981]
YNCL0030W  RDN5-5; 5S ribosomal RNA [KO:K01981]
YNCL0031W  RDN5-6; 5S ribosomal RNA [KO:K01981]
YNCN0013W  NME1; NME1 [KO:K26477]
YNCO0025W  SNR17A; SNR17A [KO:K14483]
YNCP0005C  SNR17B; SNR17B [KO:K14483]
YNL075W  IMP4; snoRNA-binding rRNA-processing protein IMP4 [KO:K14561]
YNL132W  KRE33; ribosome biosynthesis protein KRE33 [KO:K14521] [EC:2.3.1.-]
YNL163C  RIA1; GTPase RIA1 [KO:K14536] [EC:3.6.5.-]
YNL207W  RIO2; protein kinase RIO2 [KO:K07179] [EC:2.7.11.1]
YNL221C  POP1; ribonuclease P/MRP protein subunit POP1 [KO:K01164] [EC:3.1.26.5]
YNL282W  POP3; Pop3p [KO:K14522] [EC:3.1.26.5]
YNR053C  NOG2; putative GTPase NOG2 [KO:K14537]
YOL010W  RCL1; rRNA-processing endoribonuclease [KO:K11108]
YOR039W  CKB2; casein kinase 2 regulatory subunit CKB2 [KO:K03115]
YOR048C  RAT1; ssRNA exonuclease RAT1 [KO:K12619] [EC:3.1.13.-]
YOR056C  NOB1; rRNA-binding endoribonuclease [KO:K11883]
YOR061W  CKA2; casein kinase 2 catalytic subunit CKA2 [KO:K03097] [EC:2.7.11.1]
YOR119C  RIO1; protein kinase RIO1 [KO:K07178] [EC:2.7.11.1]
YOR185C  GSP2; Ran GTPase GSP2 [KO:K07936]
YOR310C  NOP58; RNA-processing protein NOP58 [KO:K14565]
YPL043W  NOP4; mRNA-binding ribosome biosynthesis protein NOP4 [KO:K14573]
YPL093W  NOG1; putative GTPase NOG1 [KO:K06943]
YPL126W  NAN1; Nan1p [KO:K14552]
YPL169C  MEX67; Mex67p [KO:K14284]
YPL204W  HRR25; serine/threonine protein kinase HRR25 [KO:K14758] [EC:2.7.11.1]
YPL217C  BMS1; GTPase BMS1 [KO:K14569]
YPR016C  TIF6; translation initiation factor 6 [KO:K03264]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
sce03010  Ribosome
KO pathway
ko03008   

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