KEGG   PATHWAY: sce04136
Entry
sce04136                    Pathway                                
Name
Autophagy - other - Saccharomyces cerevisiae (budding yeast)
Description
Autophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either in a housekeeping capacity or during stress and senescence. The process of autophagy could be divided into several stages: induction, vesicle nucleation, elongation and closure, and fusion and digestion. Most essential autophagic machineries are conserved throughout eukaryotes (see map04140 for animals and map04138 for fungi). This map is for other eukaryotes including plants and protists, where autophagy related genes (ATGs) play similar roles in the life cycle. However, autophagy has been relatively less studied in lower eukaryotes.
Class
Cellular Processes; Transport and catabolism
Pathway map
sce04136  Autophagy - other
sce04136

Other DBs
GO: 0006914
Organism
Saccharomyces cerevisiae (budding yeast) [GN:sce]
Gene
YBL078C  ATG8; ubiquitin-like protein ATG8 [KO:K08341]
YBR097W  VPS15; ubiquitin-binding serine/threonine protein kinase VPS15 [KO:K08333] [EC:2.7.11.1]
YBR217W  ATG12; Atg12p [KO:K08336]
YDL134C  PPH21; phosphoprotein phosphatase 2A catalytic subunit PPH21 [KO:K04382] [EC:3.1.3.16]
YDL149W  ATG9; autophagy protein ATG9 [KO:K17907]
YDL188C  PPH22; phosphoprotein phosphatase 2A catalytic subunit PPH22 [KO:K04382] [EC:3.1.3.16]
YFR021W  ATG18; phosphoinositide binding protein ATG18 [KO:K17908]
YGL180W  ATG1; serine/threonine protein kinase ATG1 [KO:K08269] [EC:2.7.11.1]
YHR171W  ATG7; Atg7p [KO:K08337]
YHR186C  KOG1; ubiquitin-binding TORC1 subunit KOG1 [KO:K07204]
YJR066W  TOR1; phosphatidylinositol kinase-related protein kinase TOR1 [KO:K07203] [EC:2.7.11.1]
YKL203C  TOR2; phosphatidylinositol kinase-related protein kinase TOR2 [KO:K07203] [EC:2.7.11.1]
YLR240W  VPS34; phosphatidylinositol 3-kinase VPS34 [KO:K00914] [EC:2.7.1.137]
YMR028W  TAP42; Tap42p [KO:K17606]
YNL006W  LST8; TOR complex subunit LST8 [KO:K08266]
YNL223W  ATG4; cysteine protease ATG4 [KO:K08342] [EC:3.4.22.-]
YNL242W  ATG2; Atg2p [KO:K17906]
YNR007C  ATG3; Atg3p [KO:K08343]
YPL100W  ATG21; Atg21p [KO:K17908]
YPL120W  VPS30; beclin 1 [KO:K08334]
YPL149W  ATG5; Atg5p [KO:K08339]
YPR049C  ATG11; autophagy protein ATG11 [KO:K08330]
YPR185W  ATG13; serine/threonine protein kinase regulatory subunit ATG13 [KO:K08331]
Compound
C00350  Phosphatidylethanolamine
C01194  1-Phosphatidyl-D-myo-inositol
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
Reference
  Authors
Duszenko M, Ginger ML, Brennand A, Gualdron-Lopez M, Colombo MI, Coombs GH, Coppens I, Jayabalasingham B, Langsley G, de Castro SL, Menna-Barreto R, Mottram JC, Navarro M, Rigden DJ, Romano PS, Stoka V, Turk B, Michels PA
  Title
Autophagy in protists.
  Journal
Autophagy 7:127-58 (2011)
DOI:10.4161/auto.7.2.13310
Reference
  Authors
Avin-Wittenberg T, Honig A, Galili G
  Title
Variations on a theme: plant autophagy in comparison to yeast and mammals.
  Journal
Protoplasma 249:285-99 (2012)
DOI:10.1007/s00709-011-0296-z
Reference
  Authors
Liu Y, Bassham DC
  Title
Autophagy: pathways for self-eating in plant cells.
  Journal
Annu Rev Plant Biol 63:215-37 (2012)
DOI:10.1146/annurev-arplant-042811-105441
Reference
  Authors
Yoshimoto K
  Title
Beginning to understand autophagy, an intracellular self-degradation system in plants.
  Journal
Plant Cell Physiol 53:1355-65 (2012)
DOI:10.1093/pcp/pcs099
Reference
  Authors
Li F, Chung T, Vierstra RD
  Title
AUTOPHAGY-RELATED11 plays a critical role in general autophagy- and senescence-induced mitophagy in Arabidopsis.
  Journal
Plant Cell 26:788-807 (2014)
DOI:10.1105/tpc.113.120014
Reference
  Authors
Michaeli S, Galili G, Genschik P, Fernie AR, Avin-Wittenberg T
  Title
Autophagy in Plants--What's New on the Menu?
  Journal
Trends Plant Sci 21:134-44 (2016)
DOI:10.1016/j.tplants.2015.10.008
Reference
  Authors
Yang X, Bassham DC
  Title
New Insight into the Mechanism and Function of Autophagy in Plant Cells.
  Journal
Int Rev Cell Mol Biol 320:1-40 (2015)
DOI:10.1016/bs.ircmb.2015.07.005
KO pathway
ko04136   

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