PATHWAY: sil01100 Help Entry sil01100          Global    Pathway                                 Name Metabolic pathways - Ruegeria pomeroyi Class BRITE hierarchy Pathway map sil01100   Metabolic pathways Module sil_M00002   Glycolysis, core module involving three-carbon compounds [PATH:sil01100] sil_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sil01100] sil_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:sil01100] sil_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:sil01100] sil_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:sil01100] sil_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:sil01100] sil_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sil01100] sil_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sil01100] sil_M00015   Proline biosynthesis, glutamate => proline [PATH:sil01100] sil_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:sil01100] sil_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:sil01100] sil_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:sil01100] sil_M00021   Cysteine biosynthesis, serine => cysteine [PATH:sil01100] sil_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:sil01100] sil_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:sil01100] sil_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:sil01100] sil_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:sil01100] sil_M00046   Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:sil01100] sil_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:sil01100] sil_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:sil01100] sil_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:sil01100] sil_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:sil01100] sil_M00082   Fatty acid biosynthesis, initiation [PATH:sil01100] sil_M00083   Fatty acid biosynthesis, elongation [PATH:sil01100] sil_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:sil01100] sil_M00087   beta-Oxidation [PATH:sil01100] sil_M00091   Phosphatidylcholine (PC) biosynthesis, PE => PC [PATH:sil01100] sil_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:sil01100] sil_M00096   C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:sil01100] sil_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:sil01100] sil_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:sil01100] sil_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:sil01100] sil_M00122   Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:sil01100] sil_M00134   Polyamine biosynthesis, arginine => ornithine => putrescine [PATH:sil01100] sil_M00140   C1-unit interconversion, prokaryotes [PATH:sil01100] sil_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:sil01100] sil_M00149   Succinate dehydrogenase, prokaryotes [PATH:sil01100] sil_M00151   Cytochrome bc1 complex respiratory unit [PATH:sil01100] sil_M00155   Cytochrome c oxidase, prokaryotes [PATH:sil01100] sil_M00156   Cytochrome c oxidase, cbb3-type [PATH:sil01100] sil_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:sil01100] sil_M00168   CAM (Crassulacean acid metabolism), dark [PATH:sil01100] sil_M00169   CAM (Crassulacean acid metabolism), light [PATH:sil01100] sil_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sil01100] sil_M00364   C10-C20 isoprenoid biosynthesis, bacteria [PATH:sil01100] sil_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:sil01100] sil_M00555   Betaine biosynthesis, choline => betaine [PATH:sil01100] sil_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:sil01100] sil_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:sil01100] sil_M00595   Sulfur oxidation, SOX system, thiosulfate => sulfate [PATH:sil01100] sil_M00621   Glycine cleavage system [PATH:sil01100] sil_M00741   Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:sil01100] sil_M00844   Arginine biosynthesis, ornithine => arginine [PATH:sil01100] sil_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:sil01100] sil_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:sil01100] sil_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:sil01100] sil_M00919   Ectoine degradation, ectoine => aspartate [PATH:sil01100] sil_M00958   Adenine ribonucleotide degradation, AMP => Urate [PATH:sil01100] sil_M00959   Guanine ribonucleotide degradation, GMP => Urate [PATH:sil01100] sil_M00970   Proline degradation, proline => glutamate [PATH:sil01100] sil_M00988   PreQ1 biosynthesis, GTP => 7-Aminomethyl-7-deazaguanine [PATH:sil01100] sil_M00990   Dimethylsulfoniopropionate (DMSP) degradation, demethylation pathway, DMSP => methanethiol [PATH:sil01100] Organism Ruegeria pomeroyi [GN:sil] Related pathway sil00010   Glycolysis / Gluconeogenesis sil00020   Citrate cycle (TCA cycle) sil00030   Pentose phosphate pathway sil00040   Pentose and glucuronate interconversions sil00051   Fructose and mannose metabolism sil00052   Galactose metabolism sil00053   Ascorbate and aldarate metabolism sil00061   Fatty acid biosynthesis sil00071   Fatty acid degradation sil00074   Mycolic acid biosynthesis sil00100   Steroid biosynthesis sil00121   Secondary bile acid biosynthesis sil00130   Ubiquinone and other terpenoid-quinone biosynthesis sil00190   Oxidative phosphorylation sil00220   Arginine biosynthesis sil00230   Purine metabolism sil00240   Pyrimidine metabolism sil00250   Alanine, aspartate and glutamate metabolism sil00260   Glycine, serine and threonine metabolism sil00261   Monobactam biosynthesis sil00270   Cysteine and methionine metabolism sil00280   Valine, leucine and isoleucine degradation sil00290   Valine, leucine and isoleucine biosynthesis sil00300   Lysine biosynthesis sil00310   Lysine degradation sil00330   Arginine and proline metabolism sil00332   Carbapenem biosynthesis sil00340   Histidine metabolism sil00350   Tyrosine metabolism sil00360   Phenylalanine metabolism sil00361   Chlorocyclohexane and chlorobenzene degradation sil00362   Benzoate degradation sil00364   Fluorobenzoate degradation sil00380   Tryptophan metabolism sil00400   Phenylalanine, tyrosine and tryptophan biosynthesis sil00401   Novobiocin biosynthesis sil00405   Phenazine biosynthesis sil00410   beta-Alanine metabolism sil00430   Taurine and hypotaurine metabolism sil00440   Phosphonate and phosphinate metabolism sil00450   Selenocompound metabolism sil00460   Cyanoamino acid metabolism sil00470   D-Amino acid metabolism sil00480   Glutathione metabolism sil00500   Starch and sucrose metabolism sil00520   Amino sugar and nucleotide sugar metabolism sil00521   Streptomycin biosynthesis sil00540   Lipopolysaccharide biosynthesis sil00541   Biosynthesis of various nucleotide sugars sil00543   Exopolysaccharide biosynthesis sil00550   Peptidoglycan biosynthesis sil00552   Teichoic acid biosynthesis sil00561   Glycerolipid metabolism sil00562   Inositol phosphate metabolism sil00564   Glycerophospholipid metabolism sil00592   alpha-Linolenic acid metabolism sil00620   Pyruvate metabolism sil00622   Xylene degradation sil00623   Toluene degradation sil00625   Chloroalkane and chloroalkene degradation sil00626   Naphthalene degradation sil00627   Aminobenzoate degradation sil00630   Glyoxylate and dicarboxylate metabolism sil00633   Nitrotoluene degradation sil00640   Propanoate metabolism sil00643   Styrene degradation sil00650   Butanoate metabolism sil00660   C5-Branched dibasic acid metabolism sil00670   One carbon pool by folate sil00680   Methane metabolism sil00710   Carbon fixation by Calvin cycle sil00720   Other carbon fixation pathways sil00730   Thiamine metabolism sil00740   Riboflavin metabolism sil00750   Vitamin B6 metabolism sil00760   Nicotinate and nicotinamide metabolism sil00770   Pantothenate and CoA biosynthesis sil00780   Biotin metabolism sil00785   Lipoic acid metabolism sil00790   Folate biosynthesis sil00860   Porphyrin metabolism sil00900   Terpenoid backbone biosynthesis sil00906   Carotenoid biosynthesis sil00907   Pinene, camphor and geraniol degradation sil00910   Nitrogen metabolism sil00920   Sulfur metabolism sil00930   Caprolactam degradation sil00999   Biosynthesis of various plant secondary metabolites sil01040   Biosynthesis of unsaturated fatty acids KO pathway ko01100

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