KEGG   PATHWAY: spo04141
Entry
spo04141                    Pathway                                
Name
Protein processing in endoplasmic reticulum - Schizosaccharomyces pombe (fission yeast)
Description
The endoplasmic reticulum (ER) is a subcellular organelle where proteins are folded with the help of lumenal chaperones. Newly synthesized peptides enter the ER via the sec61 pore and are glycosylated. Correctly folded proteins are packaged into transport vesicles that shuttle them to the Golgi complex. Misfolded proteins are retained within the ER lumen in complex with molecular chaperones. Proteins that are terminally misfolded bind to BiP and are directed toward degradation through the proteasome in a process called ER-associated degradation (ERAD). Accumulation of misfolded proteins in the ER causes ER stress and activates a signaling pathway called the unfolded protein response (UPR). In certain severe situations, however, the protective mechanisms activated by the UPR are not sufficient to restore normal ER function and cells die by apoptosis.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
spo04141  Protein processing in endoplasmic reticulum
spo04141

Other DBs
GO: 0030433 0034976
Organism
Schizosaccharomyces pombe (fission yeast) [GN:spo]
Gene
SPBC354.02c  sec61; translocon alpha subunit Sec61 [KO:K10956]
SPBC19G7.17  putative translocon subunit Sec61-like protein [KO:K10956]
SPBC2G2.03c  sbh1; putative translocon beta subunit Sbh1 [KO:K09481]
SPAC4G8.02c  sss1; putative translocon gamma subunit Sss1 [KO:K07342]
SPAC17G6.09  sec62; putative translocation subcomplex subunit Sec62 [KO:K12275]
SPBC36B7.03  sec63; putative translocation subcomplex subunit Sec63 [KO:K09540]
SPAC27F1.07  ost1; putative dolichyl-diphosphooligosaccharide--protein glycosyltransferase Ost1 [KO:K12666]
SPAC6F6.05  ost2; putative oligosaccharyltransferase epsilon subunit Ost2 [KO:K12668]
SPAPB17E12.11  putative oligosaccharyltransferase gamma subunit Ost3 [KO:K12669]
SPCC338.15  wbp1; putative dolichyl-diphosphooligosaccharide--protein glycotransferase subunit Wbp1 [KO:K12670]
SPBC1271.02  stt3; oligosaccharyltransferase subunit Stt3 [KO:K07151] [EC:2.4.99.18]
SPAC6G10.09  putative alpha glucosidase I Gls1 [KO:K01228] [EC:3.2.1.106]
SPAC1F5.06  lsh1; putative protein Lhs1 [KO:K09486]
SPAC22A12.15c  bip1; ER heat shock protein BiP [KO:K09490] [EC:3.6.4.10]
SPBC1347.05c  putative DNAJ domain-containing protein Scj1 [KO:K14002]
SPAC1002.03c  gls2; glucosidase II Gls2 [KO:K05546] [EC:3.2.1.207]
SPCC825.02  putative glucosidase II Gtb1 [KO:K08288]
SPAC3C7.11c  cnx1; calnexin Cnx1 [KO:K08054]
SPAC2E1P5.01c  mns1; mannosyl-oligosaccharide 1,2-alpha-mannosidase [KO:K23741] [EC:3.2.1.209]
SPCC126.08c  putative lectin family glycoprotein receptor [KO:K10082]
SPBC3H7.01  spo14; GDP/GTP exchange factor Spo14 [KO:K14003]
SPBC31F10.06c  sar1; ADP-ribosylation factor Sar1 [KO:K07953] [EC:3.6.5.-]
SPBC215.15  sec13; COPII-coated vesicle component Sec13 [KO:K14004]
SPBC8D2.20c  sec31; putative COPII-coated vesicle-associated protein Sec31 [KO:K14005]
SPCC31H12.07  sec231; putative COPII cargo receptor subunit Sec23a [KO:K14006]
SPBC776.04  sec2302; putative COPII cargo receptor subunit Sec23b [KO:K14006]
SPAC22F8.08  sec24; COPII cargo receptor Sec24/Sfb2 subunit [KO:K14007]
SPBC4.03c  putative COPII-coated vesicle-associated protein Sfb3 [KO:K14007]
SPBPJ4664.06  gpt1; UDP-glucose--glycoprotein glucosyltransferase Gpt1 [KO:K11718] [EC:2.4.1.-]
SPAC23A1.04c  mnl1; putative alpha mannosidase Mnl1 [KO:K10084]
SPAC1F5.02  putative protein disulfide isomerase [KO:K09580] [EC:5.3.4.1]
SPAC17H9.14c  protein disulfide isomerase [KO:K09584] [EC:5.3.4.1]
SPAC13F5.05  putative thioredoxin family protein [KO:K09584] [EC:5.3.4.1]
SPBC3D6.13c  pdi2; putative disulfide isomerase Pdi2 [KO:K13996] [EC:5.3.4.1]
SPAC959.05c  putative protein disulfide isomerase [KO:K13996] [EC:5.3.4.1]
SPCC1450.14c  ero12; ER protein folding oxidoreductin Ero1b [KO:K10976] [EC:1.8.4.-]
SPAC227.11c  putative misfolded glycoprotein sensor Yos9 [KO:K10088]
SPAC1687.17c  putative Der1 family protein [KO:K13989]
SPAC343.09  ubx3; UBX domain-containing protein Ubx3 [KO:K14012]
SPAC1565.08  cdc48; AAA family ATPase Cdc48 [KO:K13525]
SPBC1711.10c  npl4; putative Cdc48-Npl4-Ufd1 complex subunit Npl4 [KO:K14015]
SPBC16A3.09c  ufd1; putative Cdc48-Npl4-Ufd1 complex subunit Npl4 [KO:K14016]
SPAC13G7.02c  ssa1; putative heat shock protein Ssa1 [KO:K03283]
SPCC1739.13  ssa2; putative heat shock protein Ssa2 [KO:K03283]
SPBC1709.05  sks2; ribosome-associated molecular chaperone Sks2 [KO:K03283]
SPBC1734.11  mas5; putative DNAJ domain-containing protein Mas5 [KO:K09503]
SPBC405.06  putative DNAJ protein Xdj1 [KO:K09503]
SPBC17A3.05c  J domain-containing protein [KO:K09518]
SPAC926.04c  hsp90; Hsp90 chaperone [KO:K04079]
SPBC3B9.01  putative Hsp70 nucleotide exchange factor [KO:K09562]
SPBC3E7.02c  hsp16; heat shock protein Hsp16 [KO:K13993]
SPCC338.06c  putative Hsp20 family protein [KO:K13993]
SPAC24C9.14  otu1; OUT family ubiquitin-specific cysteine protease Otu1 [KO:K13719] [EC:3.1.2.-]
SPBC887.04c  lub1; WD repeat protein Lub1 [KO:K14018]
SPBC2D10.12  rhp23; UV excision repair protein rhp23 [KO:K10839]
SPAC26A3.16  dph1; UBA domain protein Dph1 [KO:K04523]
SPBC1709.14  putative peptide N-glycanase [KO:K01456] [EC:3.5.1.52]
SPAC20H4.10  ufd2; putative ubiquitin-protein ligase E4 [KO:K10597] [EC:2.3.2.27]
SPAC3G9.09c  tif211; translation initiation factor eIF2 alpha subunit [KO:K03237]
SPAC167.01  ire1; putative serine/threonine protein kinase Ppk4 [KO:K08852] [EC:2.7.11.1 3.1.26.-]
SPBC14F5.07  doa10; putative ubiquitin ligase Doa10 [KO:K10661] [EC:2.3.2.27]
SPAC10F6.05c  ubc6; putative ubiquitin conjugating enzyme Ubc6 [KO:K04554] [EC:2.3.2.23]
SPBC1105.09  ubc15; ubiquitin-conjugating enzyme Ubc15 [KO:K10575] [EC:2.3.2.23]
SPBP16F5.04  ubc7; ubiquitin-conjugating enzyme Ubc7/UbcP3 [KO:K04555] [EC:2.3.2.23]
SPCC4G3.13c  putative CUE domain-containing Cue1/4 family protein [KO:K14022]
SPBC17D11.02c  hrd1; synviolin family ubiquitin-protein ligase Hrd1 [KO:K10601] [EC:2.3.2.27]
SPBC28F2.08c  putative HRD ubiquitin ligase complex subunit [KO:K14026]
SPAC1B3.10c  Sel1-like repeat-containing protein [KO:K14026]
SPBC119.02  ubc4; ubiquitin-conjugating enzyme Ubc4 [KO:K06689] [EC:2.3.2.23]
SPAC23H4.18c  rbx1; RING-box protein 1 [KO:K03868] [EC:2.3.2.32]
SPAC17G6.12  cul1; cullin 1 [KO:K03347]
SPBC409.05  skp1; SCF ubiquitin ligase complex subunit Skp1 [KO:K03094]
Compound
C00076  Calcium cation
G00009   
G00010   
G00011   
G00012   
G10694   
Reference
  Authors
Naidoo N
  Title
ER and aging-Protein folding and the ER stress response.
  Journal
Ageing Res Rev 8:150-9 (2009)
DOI:10.1016/j.arr.2009.03.001
Reference
  Authors
Malhotra JD, Kaufman RJ
  Title
The endoplasmic reticulum and the unfolded protein response.
  Journal
Semin Cell Dev Biol 18:716-31 (2007)
DOI:10.1016/j.semcdb.2007.09.003
Reference
  Authors
Maattanen P, Gehring K, Bergeron JJ, Thomas DY
  Title
Protein quality control in the ER: the recognition of misfolded proteins.
  Journal
Semin Cell Dev Biol 21:500-11 (2010)
DOI:10.1016/j.semcdb.2010.03.006
Reference
  Authors
Stolz A, Wolf DH
  Title
Endoplasmic reticulum associated protein degradation: a chaperone assisted journey to hell.
  Journal
Biochim Biophys Acta 1803:694-705 (2010)
DOI:10.1016/j.bbamcr.2010.02.005
Reference
  Authors
Dejgaard K, Theberge JF, Heath-Engel H, Chevet E, Tremblay ML, Thomas DY
  Title
Organization of the Sec61 translocon, studied by high resolution native electrophoresis.
  Journal
J Proteome Res 9:1763-71 (2010)
DOI:10.1021/pr900900x
Related
pathway
spo00510  N-Glycan biosynthesis
spo03050  Proteasome
spo03060  Protein export
KO pathway
ko04141   
LinkDB

DBGET integrated database retrieval system