KEGG   PATHWAY: vpo04139
Entry
vpo04139                    Pathway                                
Name
Mitophagy - yeast - Vanderwaltozyma polyspora
Description
Mitophagy, which refers to the selective elimination of impaired or excessive mitochondria, is considered to be the main mechanism for mitochondria quality and quantity control. In yeast, oxidative stress or inhibition of TOR induces expression of Agt32, the indispensable mitochondrial outer membrane receptor. Direct phosphorylation of Atg32 by CK2 triggers mitophagy, and two mitogen-activated protein kinase (MAPK) signal transduction pathways are also important in this process. Atg11 is an adaptor protein for selective autophagy, and recruits the cargo to the phagophore assembly site (PAS), where the autophagosome is generated. Then Atg32-Atg8 interaction enhances the formation of the autophagosome surrounding the mitochondria, which finally fuses with vacuoles for degradation. Atg32-Atg11 interaction may also be regulated by Yme1-mediated processing of Atg32, as well as by mitochondrial fission machinery. Some factors have been suggested to positively or negatively regulate the mitophagy via different mechanisms, including Atg1, Atg33, Mss4, Fmc1, Mdm38, Mip1, and Ubp3-Bre5 deubiquitination complex.
Class
Cellular Processes; Transport and catabolism
Pathway map
vpo04139  Mitophagy - yeast
vpo04139

Other DBs
GO: 0000422
Organism
Vanderwaltozyma polyspora [GN:vpo]
Gene
Kpol_1036p91  hypothetical protein [KO:K11088]
Kpol_1037p22  hypothetical protein [KO:K11644]
Kpol_1061p19  hypothetical protein [KO:K09243]
Kpol_2001p73  hypothetical protein [KO:K17984]
Kpol_1045p11  hypothetical protein [KO:K08955] [EC:3.4.24.-]
Kpol_1018p113  hypothetical protein [KO:K08955] [EC:3.4.24.-]
Kpol_322p6  hypothetical protein [KO:K11244]
Kpol_1054p11  hypothetical protein [KO:K11244]
Kpol_520p17  hypothetical protein [KO:K02677] [EC:2.7.11.13]
Kpol_463p8  hypothetical protein [KO:K11229] [EC:2.7.11.25]
Kpol_1072p31  hypothetical protein [KO:K08294] [EC:2.7.12.2]
Kpol_2001p74  hypothetical protein [KO:K11231] [EC:2.7.13.3]
Kpol_1043p68  hypothetical protein [KO:K11231] [EC:2.7.13.3]
Kpol_1004p4  hypothetical protein [KO:K11233]
Kpol_1031p32  hypothetical protein [KO:K11227] [EC:2.7.12.2]
Kpol_448p13  hypothetical protein [KO:K11227] [EC:2.7.12.2]
Kpol_543p55  hypothetical protein [KO:K04441] [EC:2.7.11.24]
Kpol_489p20  hypothetical protein [KO:K03097] [EC:2.7.11.1]
Kpol_1063p4  hypothetical protein [KO:K03097] [EC:2.7.11.1]
Kpol_526p41  hypothetical protein [KO:K03115]
Kpol_1025p43  hypothetical protein [KO:K03115]
Kpol_473p21  hypothetical protein [KO:K03115]
Kpol_259p4  hypothetical protein [KO:K17969]
Kpol_2002p110  hypothetical protein [KO:K17065] [EC:3.6.5.5]
Kpol_1065p36  hypothetical protein [KO:K08330]
Kpol_1050p23  hypothetical protein [KO:K17775]
Kpol_1070p9  hypothetical protein [KO:K17774]
Kpol_1023p25  hypothetical protein [KO:K17765]
Kpol_2002p105  hypothetical protein [KO:K17764]
Kpol_1018p100  hypothetical protein [KO:K08341]
Kpol_541p49  hypothetical protein [KO:K08269] [EC:2.7.11.1]
Kpol_543p32  hypothetical protein [KO:K19717]
Kpol_1028p31  hypothetical protein [KO:K19708] [EC:3.1.3.16 3.1.3.43]
Kpol_1061p18  hypothetical protein [KO:K00889] [EC:2.7.1.68]
Kpol_1029p20  hypothetical protein [KO:K00889] [EC:2.7.1.68]
Kpol_1003p30  hypothetical protein [KO:K18191]
Kpol_1018p170  hypothetical protein [KO:K17800]
Kpol_1050p94  hypothetical protein [KO:K17800]
Kpol_1055p31  hypothetical protein [KO:K11841] [EC:3.4.19.12]
Kpol_1028p9  hypothetical protein [KO:K19718]
Compound
D00753  Sirolimus (JAN/USAN/INN)
Reference
  Authors
Kanki T, Furukawa K, Yamashita S
  Title
Mitophagy in yeast: Molecular mechanisms and physiological role.
  Journal
Biochim Biophys Acta 1853:2756-65 (2015)
DOI:10.1016/j.bbamcr.2015.01.005
Reference
  Authors
Muller M, Lu K, Reichert AS
  Title
Mitophagy and mitochondrial dynamics in Saccharomyces cerevisiae.
  Journal
Biochim Biophys Acta 1853:2766-74 (2015)
DOI:10.1016/j.bbamcr.2015.02.024
Reference
  Authors
Okamoto K, Kondo-Okamoto N, Ohsumi Y
  Title
Mitochondria-anchored receptor Atg32 mediates degradation of mitochondria via selective autophagy.
  Journal
Dev Cell 17:87-97 (2009)
DOI:10.1016/j.devcel.2009.06.013
Reference
  Authors
Kanki T, Wang K, Cao Y, Baba M, Klionsky DJ
  Title
Atg32 is a mitochondrial protein that confers selectivity during mitophagy.
  Journal
Dev Cell 17:98-109 (2009)
DOI:10.1016/j.devcel.2009.06.014
Reference
  Authors
Mao K, Wang K, Zhao M, Xu T, Klionsky DJ
  Title
Two MAPK-signaling pathways are required for mitophagy in Saccharomyces cerevisiae.
  Journal
J Cell Biol 193:755-67 (2011)
DOI:10.1083/jcb.201102092
Reference
  Authors
Aoki Y, Kanki T, Hirota Y, Kurihara Y, Saigusa T, Uchiumi T, Kang D
  Title
Phosphorylation of Serine 114 on Atg32 mediates mitophagy.
  Journal
Mol Biol Cell 22:3206-17 (2011)
DOI:10.1091/mbc.E11-02-0145
Reference
  Authors
Kanki T, Kurihara Y, Jin X, Goda T, Ono Y, Aihara M, Hirota Y, Saigusa T, Aoki Y, Uchiumi T, Kang D
  Title
Casein kinase 2 is essential for mitophagy.
  Journal
EMBO Rep 14:788-94 (2013)
DOI:10.1038/embor.2013.114
Reference
  Authors
Kondo-Okamoto N, Noda NN, Suzuki SW, Nakatogawa H, Takahashi I, Matsunami M, Hashimoto A, Inagaki F, Ohsumi Y, Okamoto K
  Title
Autophagy-related protein 32 acts as autophagic degron and directly initiates mitophagy.
  Journal
J Biol Chem 287:10631-8 (2012)
DOI:10.1074/jbc.M111.299917
Reference
  Authors
Mao K, Wang K, Liu X, Klionsky DJ
  Title
The scaffold protein Atg11 recruits fission machinery to drive selective mitochondria degradation by autophagy.
  Journal
Dev Cell 26:9-18 (2013)
DOI:10.1016/j.devcel.2013.05.024
Reference
  Authors
Wang K, Jin M, Liu X, Klionsky DJ
  Title
Proteolytic processing of Atg32 by the mitochondrial i-AAA protease Yme1 regulates mitophagy.
  Journal
Autophagy 9:1828-36 (2013)
DOI:10.4161/auto.26281
Reference
  Authors
Tal R, Winter G, Ecker N, Klionsky DJ, Abeliovich H
  Title
Aup1p, a yeast mitochondrial protein phosphatase homolog, is required for efficient stationary phase mitophagy and cell survival.
  Journal
J Biol Chem 282:5617-24 (2007)
DOI:10.1074/jbc.M605940200
Reference
  Authors
Kanki T, Wang K, Baba M, Bartholomew CR, Lynch-Day MA, Du Z, Geng J, Mao K, Yang Z, Yen WL, Klionsky DJ
  Title
A genomic screen for yeast mutants defective in selective mitochondria autophagy.
  Journal
Mol Biol Cell 20:4730-8 (2009)
DOI:10.1091/mbc.E09-03-0225
Reference
  Authors
Wang K, Yang Z, Liu X, Mao K, Nair U, Klionsky DJ
  Title
Phosphatidylinositol 4-kinases are required for autophagic membrane trafficking.
  Journal
J Biol Chem 287:37964-72 (2012)
DOI:10.1074/jbc.M112.371591
Reference
  Authors
Priault M, Salin B, Schaeffer J, Vallette FM, di Rago JP, Martinou JC
  Title
Impairing the bioenergetic status and the biogenesis of mitochondria triggers mitophagy in yeast.
  Journal
Cell Death Differ 12:1613-21 (2005)
DOI:10.1038/sj.cdd.4401697
Reference
  Authors
Nowikovsky K, Reipert S, Devenish RJ, Schweyen RJ
  Title
Mdm38 protein depletion causes loss of mitochondrial K+/H+ exchange activity, osmotic swelling and mitophagy.
  Journal
Cell Death Differ 14:1647-56 (2007)
DOI:10.1038/sj.cdd.4402167
Reference
  Authors
Zhang Y, Qi H, Taylor R, Xu W, Liu LF, Jin S
  Title
The role of autophagy in mitochondria maintenance: characterization of mitochondrial functions in autophagy-deficient S. cerevisiae strains.
  Journal
Autophagy 3:337-46 (2007)
DOI:10.4161/auto.4127
Reference
  Authors
Muller M, Kotter P, Behrendt C, Walter E, Scheckhuber CQ, Entian KD, Reichert AS
  Title
Synthetic quantitative array technology identifies the Ubp3-Bre5 deubiquitinase complex as a negative regulator of mitophagy.
  Journal
Cell Rep 10:1215-25 (2015)
DOI:10.1016/j.celrep.2015.01.044
Related
pathway
vpo04011  MAPK signaling pathway - yeast
vpo04138  Autophagy - yeast
KO pathway
ko04139   
LinkDB

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