Genome assembly ASM4054352v2reference
- Submitted GenBank assembly
- GCA_040543525.2
- Taxon
- Serangium japonicum
- Isolate
- SCAU2022
- WGS project
- JARXHU02
- Assembly type
- haploid
- Submitter
- South China Agricultural University
- Date
- Oct 25, 2024
Assembly statistics
GenBank | |
---|---|
Genome size | 433.7 Mb |
Total ungapped length | 433.7 Mb |
Number of chromosomes | 10 |
Number of scaffolds | 17 |
Scaffold N50 | 42.7 Mb |
Scaffold L50 | 4 |
Number of contigs | 104 |
Contig N50 | 11.4 Mb |
Contig L50 | 12 |
GC percent | 28 |
Genome coverage | 61.0x |
Assembly level | Chromosome |
View sequences | view GenBank sequences |
Sample details
- BioSample ID
- SAMN34239003
- Description
- Invertebrate sample from Serangium japonicum
- Submitter
- South China Agricultural University
- Isolate
- SCAU2022
- Host
- Solanum virginianum
- Collection date
- 2022-12
- Geographic location
- China: Guangzhou, South China Agricultural University, Changgang Mountain
- Tissue
- whole body
- Collected by
- Chuyang Huang
- Development stage
- adults
- Identified by
- Xing-Min Wang
- Sex
- pooled male and female
- Sample name
- SCAU2022
- SRA
- SRS21489072
- Models
- Invertebrate
- Package
- Invertebrate.1.0
- Submission date
- 2023-04-18T23:00:07.490
- Publication date
- 2024-07-06T00:00:00.000
- Last updated
- 2024-07-06T02:28:01.511
Assembly methods
- Sequencing technology
- PacBio Sequel
- Assembly method
- hifiasm v. 0.19.8
Additional genomes
Browse all Serangium japonicum genomes (1)BioProject
PRJNA957052Serangium japonicum isolate:SCAU2022 Genome sequencing
Publications
A chromosome-level genome assembly of Serangium japonicum Chapin, 1940 (Coleoptera: Coccinellidae)
M Ye, et al.
Chromosomes
Chromosome | GenBank | RefSeq | Size (bp) | GC content (%) | Unlocalized count | Action |
---|---|---|---|---|---|---|
1 | CM080867.2 | n/a | 82,691,719 | 28 | 0 | |
2 | CM080868.2 | n/a | 66,715,129 | 28 | 0 | |
3 | CM080869.2 | n/a | 48,098,286 | 27.5 | 0 | |
4 | CM080870.2 | n/a | 42,670,600 | 28 | 0 | |
5 | CM080871.2 | n/a | 41,841,830 | 31.5 | 0 | |
6 | CM080872.2 | n/a | 36,613,295 | 27 | 0 | |
7 | CM080873.2 | n/a | 32,165,884 | 27 | 0 | |
8 | CM080874.2 | n/a | 30,696,907 | 27.5 | 0 | |
9 | CM080875.2 | n/a | 30,120,830 | 27.5 | 0 | |
10 | CM080876.2 | n/a | 21,424,200 | 26 | 0 |
Note: This genome assembly includes 7 unplaced scaffolds.
Revision history
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_040543525.2 | n/a | ASM4054352v2 | Chromosome | Oct 25, 2024 | |
GCA_040543525.1 | n/a | ASM4054352v1 | Chromosome | Jul 8, 2024 |