Genome assembly ASM4054352v2
reference

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Submitted GenBank assembly
GCA_040543525.2
Taxon
Serangium japonicum
Isolate
SCAU2022
WGS project
JARXHU02
Assembly type
haploid
Submitter
South China Agricultural University
Date
Oct 25, 2024

Assembly statistics

GenBank
Genome size433.7 Mb
Total ungapped length433.7 Mb
Number of chromosomes10
Number of scaffolds17
Scaffold N5042.7 Mb
Scaffold L504
Number of contigs104
Contig N5011.4 Mb
Contig L5012
GC percent28
Genome coverage61.0x
Assembly levelChromosome
View sequencesview GenBank sequences

Sample details

BioSample ID
SAMN34239003
Description
Invertebrate sample from Serangium japonicum
Submitter
South China Agricultural University
Isolate
SCAU2022
Host
Solanum virginianum
Collection date
2022-12
Geographic location
China: Guangzhou, South China Agricultural University, Changgang Mountain
Tissue
whole body
Collected by
Chuyang Huang
Development stage
adults
Identified by
Xing-Min Wang
Sex
pooled male and female
Sample name
SCAU2022
SRA
SRS21489072
Models
Invertebrate
Package
Invertebrate.1.0
Submission date
2023-04-18T23:00:07.490
Publication date
2024-07-06T00:00:00.000
Last updated
2024-07-06T02:28:01.511

Assembly methods

Sequencing technology
PacBio Sequel
Assembly method
hifiasm v. 0.19.8

Additional genomes

Browse all Serangium japonicum genomes (1)

BioProject

PRJNA957052

Serangium japonicum isolate:SCAU2022 Genome sequencing

Publications

Showing 1 of 1

View in PubMed

Chromosomes

Chromosome
GenBank
RefSeq
Size (bp)
GC content (%)
Unlocalized count
Action
1CM080867.2

n/a

82,691,719280
2CM080868.2

n/a

66,715,129280
3CM080869.2

n/a

48,098,28627.50
4CM080870.2

n/a

42,670,600280
5CM080871.2

n/a

41,841,83031.50
6CM080872.2

n/a

36,613,295270
7CM080873.2

n/a

32,165,884270
8CM080874.2

n/a

30,696,90727.50
9CM080875.2

n/a

30,120,83027.50
10CM080876.2

n/a

21,424,200260

Note: This genome assembly includes 7 unplaced scaffolds.

Revision history

GenBank
RefSeq
Name
Level
Date
Action
GCA_040543525.2

n/a

ASM4054352v2ChromosomeOct 25, 2024
GCA_040543525.1

n/a

ASM4054352v1ChromosomeJul 8, 2024