Leaf sample from Solanum tuberosum subsp andigena CIP_700921, PacBio ... - SRA

SRX6961577: Leaf sample from Solanum tuberosum subsp andigena CIP_700921, PacBio sequencing
1 PACBIO_SMRT (PacBio RS II) run: 10.2M spots, 110.6G bases, 26Gb downloads

Design: Re-sequencing of ADG1; a heterozygous Peruvian landrace with accession CIP_700921 with PacBio long-reads technology from leaf sample.

Submitted by: McGill University

Study: The impact of copy number variations in the genomes of 12 potato genomes of varying ploidy

PRJNA556263 • SRP224589 • All experiments • All runs

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Variations in ploidy level and structural variations are common in the genomes of various potato species, potentially aiding in diversifying agronomic traits. Genomic sequencing data from twelve potato landraces of various ploidy levels was used to identify structural variation compared to the two currently available reference genomes, a double monoploid (DM1-3) potato genome and the genome of the diploid inbred clone of S. chacoense (M6).

Sample:

SAMN12684893 • SRS5483882 • All experiments • All runs

Organism: Solanum tuberosum subsp. andigenum

Library:

Name: ADG1_TTR_PCB

Instrument: PacBio RS II

Strategy: WGS

Source: GENOMIC

Selection: PCR

Layout: SINGLE

Runs: 1 run, 10.2M spots, 110.6G bases, 26Gb

Run	# of Spots	# of Bases	Size	Published
SRR10242927	10,230,920	110.6G	26Gb	2020-01-06

ID:: 9159360

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