RNAseq of sic-3 exposed to 16 degrees Celsius, replicate 2 - SRA

SRX11970133: RNAseq of sic-3 exposed to 16 degrees Celsius, replicate 2
1 ILLUMINA (Illumina HiSeq 4000) run: 28.9M spots, 8.7G bases, 3.6Gb downloads

Design: Poly(A) RNA isolated from total RNA with Dynabeads Oligo(dT) kit (Invitrogen). Library prepared with ScriptSeq v2 RNA-Seq library preparation kit (Epicentre). Libraries indexed with ScriptSeq Index PCR primers (Epicenter). Illumina HiSeq4000 paired-end sequencing at 150bp.

Submitted by: USDA-ARS

Study: Impact of sickle mutant and temperature on structure of transcripts and RNAs from Arabidopsis thaliana.

PRJNA758710 • SRP334808 • All experiments • All runs

show Abstracthide Abstract

RNAseq profiling of Arabidopsis thaliana Columbia-0 wild type and sickle-3 mutant seedlings grown under 28 and 16 degrees Celsius. The goal was to identify how the RNA pool is altered by the interaction between temperature and the sickle mutant.

Sample: RNAseq of sic-3 exposed to 16 degrees Celsius, replicate 2

SAMN21032900 • SRS9979349 • All experiments • All runs

Organism: Arabidopsis thaliana

Library:

Name: sic-3_16_rep2

Instrument: Illumina HiSeq 4000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: Oligo-dT

Layout: PAIRED

Runs: 1 run, 28.9M spots, 8.7G bases, 3.6Gb

Run	# of Spots	# of Bases	Size	Published
SRR15673679	28,862,139	8.7G	3.6Gb	2021-10-31

ID:: 15888363

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Recent activity