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SRX13322061: Tridacna crocea HiC data
1 ILLUMINA (Illumina NovaSeq 6000) run: 444.1M spots, 130G bases, 40.6Gb downloads

Design: Phase Genomics Proximo Hi-C method was employed to generate chromosome conformation captured reads.
Submitted by: Biozeron Shenzhen Inc.
Study: Tridacna crocea Genome sequencing
show Abstracthide Abstract
Tridacna crocea are some of the most colorful members of the giant clam family, which belongs to the Bivalvia. Here, we firstly report a high-quality, chromosome-scale Tridacna crocea reference genome sequence of 1.30 Gb, with a scaffold N50 of 56.38 Mb and a contig N50 of 1.29 Mb, which was assembled by combining PacBio HiFi reads and Hi-C sequencing data. Repetitive sequences accounted for 71.60% of the assembly length, and 25,440 protein-coding genes were annotated.
Sample: Invertebrate sample from Tridacna crocea
SAMN23500063 • SRS11229794 • All experiments • All runs
Organism: Tridacna crocea
Library:
Name: TC_HIC
Instrument: Illumina NovaSeq 6000
Strategy: Hi-C
Source: GENOMIC
Selection: unspecified
Layout: PAIRED
Runs: 1 run, 444.1M spots, 130G bases, 40.6Gb
Run# of Spots# of BasesSizePublished
SRR17137643444,106,725130G40.6Gb2023-10-09

ID:
18252100

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