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SRX17298375: Transcriptome sequencing and denovo assembly of Sardinella longiceps
1 ILLUMINA (Illumina HiSeq 2500) run: 72.1M spots, 21.6G bases, 8Gb downloads

Design: Total RNA was extracted from 5 tissues (muscle, gill, liver and gonad) using Trizol method. After pooling the sample in Equimolar concentrations, RNA library preparation was performed with NEBNext Poly(A)mRNA magnetic isolation module kit and NEBNext Ultra RNA library preparation kit and sequenced using illumina HiSeq 2500 paired-end 150 base pair cycle.
Submitted by: Central Marine Fisheries Research Institute
Study: Sardinella longiceps isolate:SMM4 Genome sequencing and assembly
show Abstracthide Abstract
Indian oil sardine, Sardinella longiceps is an important fishery resource of the Indian sub continent . It is also considered as a model organism for investigating the climate change and fishing impacts on the Indian ocean resources. S. longiceps is also a rich source of PUFA and cheap source of protein for the millions especially in developing countries like India. Genomic information in this species is vital to understand adaptive variation and selection patterns in pelagic fishes in view of the changing climate in the Indian ocean.
Sample:
SAMN30503998 • SRS14860197 • All experiments • All runs
Library:
Name: SAMN_Tra
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: Oligo-dT
Layout: PAIRED
Runs: 1 run, 72.1M spots, 21.6G bases, 8Gb
Run# of Spots# of BasesSizePublished
SRR2128908072,108,50621.6G8Gb2022-12-22

ID:
24119020

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