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SRX17622245: Chouioia cunea ngs
1 BGISEQ (MGISEQ-2000RS) run: 71.6M spots, 21.5G bases, 6.3Gb downloads

Design: For short-read sequencing, 1 g DNA was randomly fragmented by Covaris, the fragmented DNA was selected by Agencourt AMPure XP-Medium kit to an average size of 350 bp. The selected fragments were through end-repair, 3 adenylated, adapters-ligation, and the products were recovered by the AxyPrep Mag PCR clean up Kit. The qualified libraries were pair-end sequenced on MGISEQ2000 platform on GrandOmics. Library construction, and sequencing were conducted by NextOmics Biosciences (Wuhan, China).
Submitted by: Zhejiang University
Study: Chromosome-level genome assembly of Chouioia cunea Yang, the parasitic wasp of the fall webworm
show Abstracthide Abstract
Chouioia cunea Yang 1989 is a parasitic wasp and natural enemy of several lepidopteran pests during their pupal stage, this wasp has successfully used to control pests such as the fall webworm. Here we reported the first chromosome-level genome of Eulophidae. We applied short, long, chromatin-linked sequencing reads and transcriptomic data to assemble the chromosome-level genome of C. cunea. The version of the genome assembly of C. cunea was highly contiguous with a total assembly length of 171.99 Mb contained in 11 contigs with a GC content of 36.89%, the scaffold/contig N50 length was 31.70/26.52Mb. The Benchmarking Universal Single-Copy Orthologs completeness score is 98.70% at the protein level, including 1,318 single-copy genes and 32 duplicated genes. Repeat sequences accounted for 15.15% of the whole-genome assembly. A total of 12,258 protein-coding genes were annotated in this genome. We also predicted 324 noncoding RNAs including 84 micro-RNAs, 69 ribosomal RNAs, 28 small nuclear RNAs, 205 transfer RNAs, and 44 others. This high-quality genome of C. cunea is an important step toward bettering our knowledge of the Eulophidae, it will serve as a valuable resource for phylogenetic relationships and a better understanding of the evolution of Chalcidoidea.
Sample: ZJUG0153-NGS1
SAMN30917118 • SRS15157720 • All experiments • All runs
Organism: Chouioia cunea
Library:
Name: ZJUG0153-NGS1
Instrument: MGISEQ-2000RS
Strategy: WGS
Source: GENOMIC
Selection: PCR
Layout: PAIRED
Runs: 1 run, 71.6M spots, 21.5G bases, 6.3Gb
Run# of Spots# of BasesSizePublished
SRR2162137371,597,58221.5G6.3Gb2022-09-19

ID:
24515057

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