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set3 superantigen-like protein 5 [ Staphylococcus aureus subsp. aureus MRSA252 ]

Gene ID: 2859140, discontinued on 3-Feb-2015
  • All Gene records for this genome have been discontinued due to a change in scope for prokaryotic genomes in Gene. At the time this Gene record was discontinued, the RefSeq genome was re-annotated with the following features at this location:

Summary

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Gene symbol
set3
Gene description
superantigen-like protein 5
Locus tag
SAR0427
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Staphylococcus aureus subsp. aureus MRSA252 (strain: MRSA252, sub-species: aureus MRSA252)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus
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Genomic regions, transcripts, and products

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Genomic Sequence:
NC_002952.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Miscellaneous features

  • Loc: 457585-457866 Pfam match to entry PF02876 Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain, score -22.20, E-value 0.27
  • Loc: 457654-457725 PS00278 Staphyloccocal enterotoxin/Streptococcal pyrogenic exotoxin signature 2.

General protein information

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Names
superantigen-like protein 5
YP_039879.1
  • SSL5, SET3, SET10; bind P-selectin glycoprotein ligand-1 and inhibit P-selectin-mediated neutrophil rolling along the endothelium; these proteins share structural homology to known superantigens but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002952.2 Reference assembly

    Range
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_039879.1 superantigen-like protein 5 [Staphylococcus aureus subsp. aureus MRSA252]

    Status: PROVISIONAL

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6GJP3.1

Gene LinkOut

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