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APC APC regulator of WNT signaling pathway [ Homo sapiens (human) ]

Gene ID: 324, updated on 13-Apr-2024

Summary

Official Symbol
APCprovided by HGNC
Official Full Name
APC regulator of WNT signaling pathwayprovided by HGNC
Primary source
HGNC:HGNC:583
See related
Ensembl:ENSG00000134982 MIM:611731; AllianceGenome:HGNC:583
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
GS; DP2; DP3; BTPS2; DESMD; DP2.5; PPP1R46
Summary
This gene encodes a tumor suppressor protein that acts as an antagonist of the Wnt signaling pathway. It is also involved in other processes including cell migration and adhesion, transcriptional activation, and apoptosis. Defects in this gene cause familial adenomatous polyposis (FAP), an autosomal dominant pre-malignant disease that usually progresses to malignancy. Mutations in the APC gene have been found to occur in most colorectal cancers, where disease-associated mutations tend to be clustered in a small region designated the mutation cluster region (MCR) and result in a truncated protein product. [provided by RefSeq, Jun 2022]
Annotation information
Note: PROC (Gene ID: 5624) and APC (Gene ID: 324) loci share the APC symbol/alias in common. [08 Feb 2019]
Expression
Ubiquitous expression in brain (RPKM 25.7), colon (RPKM 4.5) and 23 other tissues See more
Orthologs
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Genomic context

Location:
5q22.2
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (112707498..112846239)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (113218062..113356772)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (112043195..112181936)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2200 Neighboring gene uncharacterized LOC102467216 Neighboring gene Sharpr-MPRA regulatory region 7502 Neighboring gene Sharpr-MPRA regulatory region 14787 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22910 Neighboring gene RNA, U6 small nuclear 482, pseudogene Neighboring gene CBX3 pseudogene 3 Neighboring gene Sharpr-MPRA regulatory region 9882 Neighboring gene signal recognition particle 19 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:112226954-112228153 Neighboring gene receptor accessory protein 5 Neighboring gene X-box binding protein 1 pseudogene 1 Neighboring gene ZRSR2 pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

Professional guidelines

Description
Professional guideline
ACMG 2013

The ACMG recommends that laboratories performing clinical sequencing seek and report mutations in APC that are pathogenic or expected to be pathogenic.

GuidelinePubMed

Associated conditions

Description Tests
Colorectal cancer
MedGen: C0346629 OMIM: 114500 GeneReviews: Lynch Syndrome
Compare labs
Desmoid disease, hereditary Compare labs
Familial adenomatous polyposis 1 Compare labs
Familial multiple polyposis syndrome
MedGen: C0032580 GeneReviews: Not available
Compare labs
Gastric adenocarcinoma and proximal polyposis of the stomach Compare labs
Hepatocellular carcinoma
MedGen: C2239176 OMIM: 114550 GeneReviews: Not available
Compare labs
Stomach cancer
MedGen: C0024623 OMIM: 613659 GeneReviews: Not available
Compare labs

Copy number response

Description
Copy number response
Triplosensitivity

No evidence available (Last evaluated 2021-07-18)

ClinGen Genome Curation Page
Haploinsufficency

Sufficient evidence for dosage pathogenicity (Last evaluated 2021-07-18)

ClinGen Genome Curation PagePubMed

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Potential readthrough

Included gene: SRP19

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables beta-catenin binding EXP
Inferred from Experiment
more info
PubMed 
enables beta-catenin binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables beta-catenin binding IDA
Inferred from Direct Assay
more info
PubMed 
enables beta-catenin binding IPI
Inferred from Physical Interaction
more info
PubMed 
NOT enables cadherin binding IDA
Inferred from Direct Assay
more info
PubMed 
enables dynein complex binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables gamma-catenin binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables gamma-catenin binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables microtubule binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables microtubule binding IDA
Inferred from Direct Assay
more info
PubMed 
enables microtubule plus-end binding IDA
Inferred from Direct Assay
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein kinase binding IDA
Inferred from Direct Assay
more info
PubMed 
enables protein kinase binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein kinase regulator activity IDA
Inferred from Direct Assay
more info
PubMed 
enables ubiquitin protein ligase binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
involved_in DNA damage response IDA
Inferred from Direct Assay
more info
PubMed 
involved_in Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in bicellular tight junction assembly NAS
Non-traceable Author Statement
more info
PubMed 
involved_in cell adhesion NAS
Non-traceable Author Statement
more info
PubMed 
involved_in cell fate specification IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in cell migration IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in cell migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in endocardial cushion morphogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in heart valve development ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in insulin receptor signaling pathway IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within mitotic cytokinesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within mitotic spindle assembly checkpoint signaling IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in negative regulation of G1/S transition of mitotic cell cycle IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in negative regulation of canonical Wnt signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in negative regulation of canonical Wnt signaling pathway IC
Inferred by Curator
more info
PubMed 
acts_upstream_of_or_within negative regulation of canonical Wnt signaling pathway IGI
Inferred from Genetic Interaction
more info
PubMed 
involved_in negative regulation of canonical Wnt signaling pathway IGI
Inferred from Genetic Interaction
more info
PubMed 
involved_in negative regulation of canonical Wnt signaling pathway IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in negative regulation of canonical Wnt signaling pathway NAS
Non-traceable Author Statement
more info
PubMed 
involved_in negative regulation of cell cycle G1/S phase transition IDA
Inferred from Direct Assay
more info
PubMed 
involved_in negative regulation of cell population proliferation IDA
Inferred from Direct Assay
more info
PubMed 
involved_in negative regulation of cyclin-dependent protein serine/threonine kinase activity IDA
Inferred from Direct Assay
more info
PubMed 
involved_in negative regulation of microtubule depolymerization IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in negative regulation of microtubule depolymerization IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within negative regulation of microtubule depolymerization IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in nervous system development IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in pattern specification process IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within positive regulation of apoptotic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within positive regulation of cell migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of cold-induced thermogenesis ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
involved_in positive regulation of protein catabolic process IC
Inferred by Curator
more info
PubMed 
acts_upstream_of_or_within positive regulation of protein catabolic process IGI
Inferred from Genetic Interaction
more info
PubMed 
involved_in positive regulation of protein localization to centrosome IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within positive regulation of pseudopodium assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process NAS
Non-traceable Author Statement
more info
PubMed 
involved_in protein-containing complex assembly IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within regulation of attachment of spindle microtubules to kinetochore IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in regulation of attachment of spindle microtubules to kinetochore NAS
Non-traceable Author Statement
more info
PubMed 
involved_in regulation of microtubule-based movement IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in regulation of microtubule-based process IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IDA
Inferred from Direct Assay
more info
 
part_of Wnt signalosome NAS
Non-traceable Author Statement
more info
PubMed 
colocalizes_with adherens junction IDA
Inferred from Direct Assay
more info
PubMed 
part_of beta-catenin destruction complex IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of beta-catenin destruction complex IDA
Inferred from Direct Assay
more info
PubMed 
part_of beta-catenin destruction complex NAS
Non-traceable Author Statement
more info
PubMed 
located_in bicellular tight junction IDA
Inferred from Direct Assay
more info
PubMed 
part_of catenin complex IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of catenin complex IDA
Inferred from Direct Assay
more info
PubMed 
located_in centrosome IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
colocalizes_with cytoplasmic microtubule IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytosol TAS
Traceable Author Statement
more info
 
located_in kinetochore IDA
Inferred from Direct Assay
more info
PubMed 
located_in lamellipodium IDA
Inferred from Direct Assay
more info
PubMed 
located_in lateral plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
colocalizes_with microtubule IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleoplasm TAS
Traceable Author Statement
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in perinuclear region of cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
colocalizes_with plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in ruffle membrane IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
adenomatous polyposis coli protein
Names
APC, WNT signaling pathway regulator
WNT signaling pathway regulator
adenomatosis polyposis coli tumor suppressor
adenomatous polyposis coli (APC)
deleted in polyposis 2.5
epididymis secretory sperm binding protein
protein phosphatase 1, regulatory subunit 46

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_008481.4 RefSeqGene

    Range
    19985..158719
    Download
    GenBank, FASTA, Sequence Viewer (Graphics), LRG_130

mRNA and Protein(s)

  1. NM_000038.6NP_000029.2  adenomatous polyposis coli protein isoform b

    See identical proteins and their annotated locations for NP_000029.2

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. This variant also contains an alternate in-frame exon compared to variant 1. The encoded isoform (b) has a distinct N-terminus and is longer than isoform a. Variants 2, 3, and 4 all encode the same isoform (b).
    Source sequence(s)
    AB210001, CA313732, DA795663, M73548
    Consensus CDS
    CCDS4107.1
    UniProtKB/Swiss-Prot
    B7Z2B6, D3DT03, P25054, Q15162, Q15163, Q93042
    UniProtKB/TrEMBL
    A0A224ANK2
    Related
    ENSP00000257430.4, ENST00000257430.9
    Conserved Domains (17) summary
    smart00185
    Location:649689
    ARM; Armadillo/beta-catenin-like repeats
    pfam16689
    Location:455
    APC_N_CC; Coiled-coil N-terminus of APC, dimerisation domain
    sd00043
    Location:465508
    ARM; armadillo repeat [structural motif]
    pfam05923
    Location:16371660
    APC_r; APC repeat
    pfam05924
    Location:20332052
    SAMP; SAMP Motif
    pfam05937
    Location:26702843
    EB1_binding; EB-1 Binding Domain
    pfam05956
    Location:22232568
    APC_basic; APC basic domain
    pfam11414
    Location:127207
    Suppressor_APC; Adenomatous polyposis coli tumor suppressor protein
    pfam16629
    Location:7321018
    Arm_APC_u3; Armadillo-associated region on APC
    pfam16630
    Location:10361135
    APC_u5; Unstructured region on APC between 1st and 2nd catenin-bdg motifs
    pfam16633
    Location:12831368
    APC_u9; Unstructured region on APC between 1st two creatine-rich regions
    pfam16634
    Location:16621715
    APC_u13; Unstructured region on APC between APC_crr and SAMP
    pfam16635
    Location:17461839
    APC_u14; Unstructured region on APC between SAMP and APC_crr
    pfam16636
    Location:18731947
    APC_u15; Unstructured region on APC between APC_crr regions 5 and 6
    cl21727
    Location:533734
    VATPase_H; VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The ...
    cl25732
    Location:4272
    SMC_N; RecF/RecN/SMC N terminal domain
    cl25751
    Location:12911701
    DUF4045; Domain of unknown function (DUF4045)
  2. NM_001127510.3NP_001120982.1  adenomatous polyposis coli protein isoform b

    See identical proteins and their annotated locations for NP_001120982.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. This variant also contains an alternate in-frame exon compared to variant 1. The encoded isoform (b) has a distinct N-terminus and is longer than isoform a. Variants 2, 3, and 4 all encode the same isoform (b).
    Source sequence(s)
    AB210001, CA313732, DA795663
    Consensus CDS
    CCDS4107.1
    UniProtKB/Swiss-Prot
    B7Z2B6, D3DT03, P25054, Q15162, Q15163, Q93042
    UniProtKB/TrEMBL
    A0A224ANK2
    Related
    ENSP00000427089.2, ENST00000508376.6
    Conserved Domains (17) summary
    smart00185
    Location:649689
    ARM; Armadillo/beta-catenin-like repeats
    pfam16689
    Location:455
    APC_N_CC; Coiled-coil N-terminus of APC, dimerisation domain
    sd00043
    Location:465508
    ARM; armadillo repeat [structural motif]
    pfam05923
    Location:16371660
    APC_r; APC repeat
    pfam05924
    Location:20332052
    SAMP; SAMP Motif
    pfam05937
    Location:26702843
    EB1_binding; EB-1 Binding Domain
    pfam05956
    Location:22232568
    APC_basic; APC basic domain
    pfam11414
    Location:127207
    Suppressor_APC; Adenomatous polyposis coli tumor suppressor protein
    pfam16629
    Location:7321018
    Arm_APC_u3; Armadillo-associated region on APC
    pfam16630
    Location:10361135
    APC_u5; Unstructured region on APC between 1st and 2nd catenin-bdg motifs
    pfam16633
    Location:12831368
    APC_u9; Unstructured region on APC between 1st two creatine-rich regions
    pfam16634
    Location:16621715
    APC_u13; Unstructured region on APC between APC_crr and SAMP
    pfam16635
    Location:17461839
    APC_u14; Unstructured region on APC between SAMP and APC_crr
    pfam16636
    Location:18731947
    APC_u15; Unstructured region on APC between APC_crr regions 5 and 6
    cl21727
    Location:533734
    VATPase_H; VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The ...
    cl25732
    Location:4272
    SMC_N; RecF/RecN/SMC N terminal domain
    cl25751
    Location:12911701
    DUF4045; Domain of unknown function (DUF4045)
  3. NM_001127511.3NP_001120983.2  adenomatous polyposis coli protein isoform a

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) encodes the shorter isoform (a).
    Source sequence(s)
    AB210001, AC136500, AK294544, BP230350, CA313732
    UniProtKB/TrEMBL
    A0A224AV41
    Related
    ENSP00000423224.2, ENST00000507379.6
    Conserved Domains (13) summary
    cd00020
    Location:593713
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    pfam05923
    Location:16191643
    APC_crr; APC cysteine-rich region
    pfam05924
    Location:20162035
    SAMP; SAMP Motif
    pfam05937
    Location:26522825
    EB1_binding; EB-1 Binding Domain
    pfam05956
    Location:22052550
    APC_basic; APC basic domain
    pfam11414
    Location:137217
    Suppressor_APC; Adenomatous polyposis coli tumour suppressor protein
    pfam16629
    Location:7141001
    Arm_APC_u3; Armadillo-associated region on APC
    pfam16630
    Location:10181117
    APC_u5; Unstructured region on APC between 1st and 2nd catenin-bdg motifs
    pfam16633
    Location:12651350
    APC_u9; Unstructured region on APC between 1st two creatine-rich regions
    pfam16634
    Location:16441700
    APC_u13; Unstructured region on APC between APC_crr and SAMP
    pfam16635
    Location:17211821
    APC_u14; Unstructured region on APC between SAMP and APC_crr
    pfam16636
    Location:18581929
    APC_u15; Unstructured region on APC between APC_crr regions 5 and 6
    sd00043
    Location:447490
    ARM; armadillo repeat [structural motif]
  4. NM_001354895.2NP_001341824.1  adenomatous polyposis coli protein isoform b

    Status: REVIEWED

    Description
    Transcript Variant: This variant (4), as well as variants 2 and 3, encodes isoform b.
    Source sequence(s)
    AC008575, AC136500
    Consensus CDS
    CCDS4107.1
    UniProtKB/Swiss-Prot
    B7Z2B6, D3DT03, P25054, Q15162, Q15163, Q93042
    UniProtKB/TrEMBL
    A0A224ANK2
    Conserved Domains (17) summary
    smart00185
    Location:649689
    ARM; Armadillo/beta-catenin-like repeats
    pfam16689
    Location:455
    APC_N_CC; Coiled-coil N-terminus of APC, dimerisation domain
    sd00043
    Location:465508
    ARM; armadillo repeat [structural motif]
    pfam05923
    Location:16371660
    APC_r; APC repeat
    pfam05924
    Location:20332052
    SAMP; SAMP Motif
    pfam05937
    Location:26702843
    EB1_binding; EB-1 Binding Domain
    pfam05956
    Location:22232568
    APC_basic; APC basic domain
    pfam11414
    Location:127207
    Suppressor_APC; Adenomatous polyposis coli tumor suppressor protein
    pfam16629
    Location:7321018
    Arm_APC_u3; Armadillo-associated region on APC
    pfam16630
    Location:10361135
    APC_u5; Unstructured region on APC between 1st and 2nd catenin-bdg motifs
    pfam16633
    Location:12831368
    APC_u9; Unstructured region on APC between 1st two creatine-rich regions
    pfam16634
    Location:16621715
    APC_u13; Unstructured region on APC between APC_crr and SAMP
    pfam16635
    Location:17461839
    APC_u14; Unstructured region on APC between SAMP and APC_crr
    pfam16636
    Location:18731947
    APC_u15; Unstructured region on APC between APC_crr regions 5 and 6
    cl21727
    Location:533734
    VATPase_H; VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The ...
    cl25732
    Location:4272
    SMC_N; RecF/RecN/SMC N terminal domain
    cl25751
    Location:12911701
    DUF4045; Domain of unknown function (DUF4045)
  5. NM_001354896.2NP_001341825.1  adenomatous polyposis coli protein isoform c

    Status: REVIEWED

    Source sequence(s)
    AC008575, AC136500
    UniProtKB/TrEMBL
    A0A224ANK2, R4GMU6
    Related
    ENSP00000473355.2, ENST00000504915.3
    Conserved Domains (17) summary
    smart00185
    Location:667707
    ARM; Armadillo/beta-catenin-like repeats
    pfam00514
    Location:709749
    Arm; Armadillo/beta-catenin-like repeat
    pfam16689
    Location:455
    APC_N_CC; Coiled-coil N-terminus of APC, dimerisation domain
    sd00043
    Location:581613
    ARM; armadillo repeat [structural motif]
    pfam05923
    Location:16551678
    APC_r; APC repeat
    pfam05924
    Location:20512070
    SAMP; SAMP Motif
    pfam05937
    Location:26882861
    EB1_binding; EB-1 Binding Domain
    pfam05956
    Location:22412586
    APC_basic; APC basic domain
    pfam11414
    Location:127207
    Suppressor_APC; Adenomatous polyposis coli tumor suppressor protein
    pfam16629
    Location:7501036
    Arm_APC_u3; Armadillo-associated region on APC
    pfam16630
    Location:10541153
    APC_u5; Unstructured region on APC between 1st and 2nd catenin-bdg motifs
    pfam16633
    Location:13011386
    APC_u9; Unstructured region on APC between 1st two creatine-rich regions
    pfam16634
    Location:16801733
    APC_u13; Unstructured region on APC between APC_crr and SAMP
    pfam16635
    Location:17641857
    APC_u14; Unstructured region on APC between SAMP and APC_crr
    pfam16636
    Location:18911965
    APC_u15; Unstructured region on APC between APC_crr regions 5 and 6
    cl25732
    Location:4272
    SMC_N; RecF/RecN/SMC N terminal domain
    cl25751
    Location:13091719
    DUF4045; Domain of unknown function (DUF4045)
  6. NM_001354897.2NP_001341826.1  adenomatous polyposis coli protein isoform d

    Status: REVIEWED

    Source sequence(s)
    AC008575, AC136500
    UniProtKB/TrEMBL
    A0A224AV41
    Conserved Domains (15) summary
    smart00185
    Location:659699
    ARM; Armadillo/beta-catenin-like repeats
    pfam00514
    Location:701741
    Arm; Armadillo/beta-catenin-like repeat
    sd00043
    Location:475518
    ARM; armadillo repeat [structural motif]
    pfam05923
    Location:16471670
    APC_r; APC repeat
    pfam05924
    Location:20432062
    SAMP; SAMP Motif
    pfam05937
    Location:26802853
    EB1_binding; EB-1 Binding Domain
    pfam05956
    Location:22332578
    APC_basic; APC basic domain
    pfam11414
    Location:137217
    Suppressor_APC; Adenomatous polyposis coli tumor suppressor protein
    pfam16629
    Location:7421028
    Arm_APC_u3; Armadillo-associated region on APC
    pfam16630
    Location:10461145
    APC_u5; Unstructured region on APC between 1st and 2nd catenin-bdg motifs
    pfam16633
    Location:12931378
    APC_u9; Unstructured region on APC between 1st two creatine-rich regions
    pfam16634
    Location:16721725
    APC_u13; Unstructured region on APC between APC_crr and SAMP
    pfam16635
    Location:17561849
    APC_u14; Unstructured region on APC between SAMP and APC_crr
    pfam16636
    Location:18831957
    APC_u15; Unstructured region on APC between APC_crr regions 5 and 6
    cl25751
    Location:13011711
    DUF4045; Domain of unknown function (DUF4045)
  7. NM_001354898.2NP_001341827.1  adenomatous polyposis coli protein isoform e

    Status: REVIEWED

    Source sequence(s)
    AC008575, AC136500
    UniProtKB/TrEMBL
    A0A224ANK2
    Conserved Domains (15) summary
    smart00185
    Location:624664
    ARM; Armadillo/beta-catenin-like repeats
    pfam00514
    Location:666706
    Arm; Armadillo/beta-catenin-like repeat
    sd00043
    Location:440483
    ARM; armadillo repeat [structural motif]
    pfam05923
    Location:16121635
    APC_r; APC repeat
    pfam05924
    Location:20082027
    SAMP; SAMP Motif
    pfam05937
    Location:26452818
    EB1_binding; EB-1 Binding Domain
    pfam05956
    Location:21982543
    APC_basic; APC basic domain
    pfam11414
    Location:102182
    Suppressor_APC; Adenomatous polyposis coli tumor suppressor protein
    pfam16629
    Location:707993
    Arm_APC_u3; Armadillo-associated region on APC
    pfam16630
    Location:10111110
    APC_u5; Unstructured region on APC between 1st and 2nd catenin-bdg motifs
    pfam16633
    Location:12581343
    APC_u9; Unstructured region on APC between 1st two creatine-rich regions
    pfam16634
    Location:16371690
    APC_u13; Unstructured region on APC between APC_crr and SAMP
    pfam16635
    Location:17211814
    APC_u14; Unstructured region on APC between SAMP and APC_crr
    pfam16636
    Location:18481922
    APC_u15; Unstructured region on APC between APC_crr regions 5 and 6
    cl25751
    Location:12661676
    DUF4045; Domain of unknown function (DUF4045)
  8. NM_001354899.2NP_001341828.1  adenomatous polyposis coli protein isoform f

    Status: REVIEWED

    Source sequence(s)
    AC008575, AC136500
    UniProtKB/TrEMBL
    A0A224ANK2
    Conserved Domains (16) summary
    smart00185
    Location:621661
    ARM; Armadillo/beta-catenin-like repeats
    pfam00514
    Location:663703
    Arm; Armadillo/beta-catenin-like repeat
    pfam16689
    Location:455
    APC_N_CC; Coiled-coil N-terminus of APC, dimerisation domain
    sd00043
    Location:437480
    ARM; armadillo repeat [structural motif]
    pfam05923
    Location:16091632
    APC_r; APC repeat
    pfam05924
    Location:20052024
    SAMP; SAMP Motif
    pfam05937
    Location:26422815
    EB1_binding; EB-1 Binding Domain
    pfam05956
    Location:21952540
    APC_basic; APC basic domain
    pfam11414
    Location:127207
    Suppressor_APC; Adenomatous polyposis coli tumor suppressor protein
    pfam16629
    Location:704990
    Arm_APC_u3; Armadillo-associated region on APC
    pfam16630
    Location:10081107
    APC_u5; Unstructured region on APC between 1st and 2nd catenin-bdg motifs
    pfam16633
    Location:12551340
    APC_u9; Unstructured region on APC between 1st two creatine-rich regions
    pfam16634
    Location:16341687
    APC_u13; Unstructured region on APC between APC_crr and SAMP
    pfam16635
    Location:17181811
    APC_u14; Unstructured region on APC between SAMP and APC_crr
    pfam16636
    Location:18451919
    APC_u15; Unstructured region on APC between APC_crr regions 5 and 6
    cl25751
    Location:12631673
    DUF4045; Domain of unknown function (DUF4045)
  9. NM_001354900.2NP_001341829.1  adenomatous polyposis coli protein isoform g

    Status: REVIEWED

    Source sequence(s)
    AC008575, AC136500
    UniProtKB/TrEMBL
    A0A224ANK2
    Conserved Domains (15) summary
    smart00185
    Location:608648
    ARM; Armadillo/beta-catenin-like repeats
    pfam00514
    Location:650690
    Arm; Armadillo/beta-catenin-like repeat
    sd00043
    Location:522554
    ARM; armadillo repeat [structural motif]
    pfam05923
    Location:15961619
    APC_r; APC repeat
    pfam05924
    Location:19922011
    SAMP; SAMP Motif
    pfam05937
    Location:26292802
    EB1_binding; EB-1 Binding Domain
    pfam05956
    Location:21822527
    APC_basic; APC basic domain
    pfam11414
    Location:68148
    Suppressor_APC; Adenomatous polyposis coli tumor suppressor protein
    pfam16629
    Location:691977
    Arm_APC_u3; Armadillo-associated region on APC
    pfam16630
    Location:9951094
    APC_u5; Unstructured region on APC between 1st and 2nd catenin-bdg motifs
    pfam16633
    Location:12421327
    APC_u9; Unstructured region on APC between 1st two creatine-rich regions
    pfam16634
    Location:16211674
    APC_u13; Unstructured region on APC between APC_crr and SAMP
    pfam16635
    Location:17051798
    APC_u14; Unstructured region on APC between SAMP and APC_crr
    pfam16636
    Location:18321906
    APC_u15; Unstructured region on APC between APC_crr regions 5 and 6
    cl25751
    Location:12501660
    DUF4045; Domain of unknown function (DUF4045)
  10. NM_001354901.2NP_001341830.1  adenomatous polyposis coli protein isoform h

    Status: REVIEWED

    Source sequence(s)
    AC008575, AC136500
    UniProtKB/TrEMBL
    A0A224ANK2
    Conserved Domains (15) summary
    smart00185
    Location:590630
    ARM; Armadillo/beta-catenin-like repeats
    pfam00514
    Location:632672
    Arm; Armadillo/beta-catenin-like repeat
    sd00043
    Location:406449
    ARM; armadillo repeat [structural motif]
    pfam05923
    Location:15781601
    APC_r; APC repeat
    pfam05924
    Location:19741993
    SAMP; SAMP Motif
    pfam05937
    Location:26112784
    EB1_binding; EB-1 Binding Domain
    pfam05956
    Location:21642509
    APC_basic; APC basic domain
    pfam11414
    Location:68148
    Suppressor_APC; Adenomatous polyposis coli tumor suppressor protein
    pfam16629
    Location:673959
    Arm_APC_u3; Armadillo-associated region on APC
    pfam16630
    Location:9771076
    APC_u5; Unstructured region on APC between 1st and 2nd catenin-bdg motifs
    pfam16633
    Location:12241309
    APC_u9; Unstructured region on APC between 1st two creatine-rich regions
    pfam16634
    Location:16031656
    APC_u13; Unstructured region on APC between APC_crr and SAMP
    pfam16635
    Location:16871780
    APC_u14; Unstructured region on APC between SAMP and APC_crr
    pfam16636
    Location:18141888
    APC_u15; Unstructured region on APC between APC_crr regions 5 and 6
    cl25751
    Location:12321642
    DUF4045; Domain of unknown function (DUF4045)
  11. NM_001354902.2NP_001341831.1  adenomatous polyposis coli protein isoform i

    Status: REVIEWED

    Source sequence(s)
    AC008575, AC136500
    UniProtKB/TrEMBL
    A0A224AV41
    Conserved Domains (15) summary
    smart00185
    Location:558598
    ARM; Armadillo/beta-catenin-like repeats
    pfam00514
    Location:600640
    Arm; Armadillo/beta-catenin-like repeat
    sd00043
    Location:374417
    ARM; armadillo repeat [structural motif]
    pfam05923
    Location:15461569
    APC_r; APC repeat
    pfam05924
    Location:19421961
    SAMP; SAMP Motif
    pfam05937
    Location:25792752
    EB1_binding; EB-1 Binding Domain
    pfam05956
    Location:21322477
    APC_basic; APC basic domain
    pfam11414
    Location:137217
    Suppressor_APC; Adenomatous polyposis coli tumor suppressor protein
    pfam16629
    Location:641927
    Arm_APC_u3; Armadillo-associated region on APC
    pfam16630
    Location:9451044
    APC_u5; Unstructured region on APC between 1st and 2nd catenin-bdg motifs
    pfam16633
    Location:11921277
    APC_u9; Unstructured region on APC between 1st two creatine-rich regions
    pfam16634
    Location:15711624
    APC_u13; Unstructured region on APC between APC_crr and SAMP
    pfam16635
    Location:16551748
    APC_u14; Unstructured region on APC between SAMP and APC_crr
    pfam16636
    Location:17821856
    APC_u15; Unstructured region on APC between APC_crr regions 5 and 6
    cl25751
    Location:12001610
    DUF4045; Domain of unknown function (DUF4045)
  12. NM_001354903.2NP_001341832.1  adenomatous polyposis coli protein isoform j

    Status: REVIEWED

    Source sequence(s)
    AC008575, AC136500
    UniProtKB/TrEMBL
    A0A224ANK2
    Conserved Domains (17) summary
    smart00185
    Location:548588
    ARM; Armadillo/beta-catenin-like repeats
    pfam00514
    Location:590630
    Arm; Armadillo/beta-catenin-like repeat
    pfam16689
    Location:455
    APC_N_CC; Coiled-coil N-terminus of APC, dimerisation domain
    sd00043
    Location:364407
    ARM; armadillo repeat [structural motif]
    pfam05923
    Location:15361559
    APC_r; APC repeat
    pfam05924
    Location:19321951
    SAMP; SAMP Motif
    pfam05937
    Location:25692742
    EB1_binding; EB-1 Binding Domain
    pfam05956
    Location:21222467
    APC_basic; APC basic domain
    pfam11414
    Location:127207
    Suppressor_APC; Adenomatous polyposis coli tumor suppressor protein
    pfam16629
    Location:631917
    Arm_APC_u3; Armadillo-associated region on APC
    pfam16630
    Location:9351034
    APC_u5; Unstructured region on APC between 1st and 2nd catenin-bdg motifs
    pfam16633
    Location:11821267
    APC_u9; Unstructured region on APC between 1st two creatine-rich regions
    pfam16634
    Location:15611614
    APC_u13; Unstructured region on APC between APC_crr and SAMP
    pfam16635
    Location:16451738
    APC_u14; Unstructured region on APC between SAMP and APC_crr
    pfam16636
    Location:17721846
    APC_u15; Unstructured region on APC between APC_crr regions 5 and 6
    cl25732
    Location:4272
    SMC_N; RecF/RecN/SMC N terminal domain
    cl25751
    Location:11901600
    DUF4045; Domain of unknown function (DUF4045)
  13. NM_001354904.2NP_001341833.1  adenomatous polyposis coli protein isoform k

    Status: REVIEWED

    Source sequence(s)
    AC008575, AC136500
    UniProtKB/TrEMBL
    A0A224ANK2
    Conserved Domains (15) summary
    smart00185
    Location:523563
    ARM; Armadillo/beta-catenin-like repeats
    pfam00514
    Location:565605
    Arm; Armadillo/beta-catenin-like repeat
    sd00043
    Location:339382
    ARM; armadillo repeat [structural motif]
    pfam05923
    Location:15111534
    APC_r; APC repeat
    pfam05924
    Location:19071926
    SAMP; SAMP Motif
    pfam05937
    Location:25442717
    EB1_binding; EB-1 Binding Domain
    pfam05956
    Location:20972442
    APC_basic; APC basic domain
    pfam11414
    Location:102182
    Suppressor_APC; Adenomatous polyposis coli tumor suppressor protein
    pfam16629
    Location:606892
    Arm_APC_u3; Armadillo-associated region on APC
    pfam16630
    Location:9101009
    APC_u5; Unstructured region on APC between 1st and 2nd catenin-bdg motifs
    pfam16633
    Location:11571242
    APC_u9; Unstructured region on APC between 1st two creatine-rich regions
    pfam16634
    Location:15361589
    APC_u13; Unstructured region on APC between APC_crr and SAMP
    pfam16635
    Location:16201713
    APC_u14; Unstructured region on APC between SAMP and APC_crr
    pfam16636
    Location:17471821
    APC_u15; Unstructured region on APC between APC_crr regions 5 and 6
    cl25751
    Location:11651575
    DUF4045; Domain of unknown function (DUF4045)
  14. NM_001354905.2NP_001341834.1  adenomatous polyposis coli protein isoform l

    Status: REVIEWED

    Source sequence(s)
    AC008575, AC136500
    UniProtKB/TrEMBL
    A0A224ANK2
    Conserved Domains (15) summary
    smart00185
    Location:489529
    ARM; Armadillo/beta-catenin-like repeats
    pfam00514
    Location:531571
    Arm; Armadillo/beta-catenin-like repeat
    sd00043
    Location:305348
    ARM; armadillo repeat [structural motif]
    pfam05923
    Location:14771500
    APC_r; APC repeat
    pfam05924
    Location:18731892
    SAMP; SAMP Motif
    pfam05937
    Location:25102683
    EB1_binding; EB-1 Binding Domain
    pfam05956
    Location:20632408
    APC_basic; APC basic domain
    pfam11414
    Location:68148
    Suppressor_APC; Adenomatous polyposis coli tumor suppressor protein
    pfam16629
    Location:572858
    Arm_APC_u3; Armadillo-associated region on APC
    pfam16630
    Location:876975
    APC_u5; Unstructured region on APC between 1st and 2nd catenin-bdg motifs
    pfam16633
    Location:11231208
    APC_u9; Unstructured region on APC between 1st two creatine-rich regions
    pfam16634
    Location:15021555
    APC_u13; Unstructured region on APC between APC_crr and SAMP
    pfam16635
    Location:15861679
    APC_u14; Unstructured region on APC between SAMP and APC_crr
    pfam16636
    Location:17131787
    APC_u15; Unstructured region on APC between APC_crr regions 5 and 6
    cl25751
    Location:11311541
    DUF4045; Domain of unknown function (DUF4045)
  15. NM_001354906.2NP_001341835.1  adenomatous polyposis coli protein isoform m

    Status: REVIEWED

    Source sequence(s)
    AC008575, AC136500
    UniProtKB/TrEMBL
    A0A224ANK2
    Conserved Domains (14) summary
    smart00185
    Location:366406
    ARM; Armadillo/beta-catenin-like repeats
    pfam00514
    Location:408448
    Arm; Armadillo/beta-catenin-like repeat
    sd00043
    Location:182225
    ARM; armadillo repeat [structural motif]
    pfam05923
    Location:13541377
    APC_r; APC repeat
    pfam05924
    Location:17501769
    SAMP; SAMP Motif
    pfam05937
    Location:23872560
    EB1_binding; EB-1 Binding Domain
    pfam05956
    Location:19402285
    APC_basic; APC basic domain
    pfam16629
    Location:449735
    Arm_APC_u3; Armadillo-associated region on APC
    pfam16630
    Location:753852
    APC_u5; Unstructured region on APC between 1st and 2nd catenin-bdg motifs
    pfam16633
    Location:10001085
    APC_u9; Unstructured region on APC between 1st two creatine-rich regions
    pfam16634
    Location:13791432
    APC_u13; Unstructured region on APC between APC_crr and SAMP
    pfam16635
    Location:14631556
    APC_u14; Unstructured region on APC between SAMP and APC_crr
    pfam16636
    Location:15901664
    APC_u15; Unstructured region on APC between APC_crr regions 5 and 6
    cl25751
    Location:10081418
    DUF4045; Domain of unknown function (DUF4045)
  16. NM_001407446.1NP_001394375.1  adenomatous polyposis coli protein isoform n

    Status: REVIEWED

    Source sequence(s)
    AC008575, AC136500
  17. NM_001407447.1NP_001394376.1  adenomatous polyposis coli protein isoform c

    Status: REVIEWED

    Source sequence(s)
    AC008575, AC136500
    UniProtKB/TrEMBL
    R4GMU6
  18. NM_001407448.1NP_001394377.1  adenomatous polyposis coli protein isoform c

    Status: REVIEWED

    Source sequence(s)
    AC008575, AC136500
    UniProtKB/TrEMBL
    R4GMU6
  19. NM_001407449.1NP_001394378.1  adenomatous polyposis coli protein isoform c

    Status: REVIEWED

    Source sequence(s)
    AC008575, AC136500
    UniProtKB/TrEMBL
    R4GMU6
  20. NM_001407450.1NP_001394379.1  adenomatous polyposis coli protein isoform b

    Status: REVIEWED

    Source sequence(s)
    AC008575, AC136500
    UniProtKB/Swiss-Prot
    B7Z2B6, D3DT03, P25054, Q15162, Q15163, Q93042
    Related
    ENSP00000426541.2, ENST00000509732.6
  21. NM_001407451.1NP_001394380.1  adenomatous polyposis coli protein isoform o

    Status: REVIEWED

    Source sequence(s)
    AC008575, AC136500
  22. NM_001407452.1NP_001394381.1  adenomatous polyposis coli protein isoform p

    Status: REVIEWED

    Source sequence(s)
    AC008575, AC136500
  23. NM_001407453.1NP_001394382.1  adenomatous polyposis coli protein isoform h

    Status: REVIEWED

    Source sequence(s)
    AC008575, AC136500
  24. NM_001407454.1NP_001394383.1  adenomatous polyposis coli protein isoform q

    Status: REVIEWED

    Source sequence(s)
    AC008575, AC136500
  25. NM_001407455.1NP_001394384.1  adenomatous polyposis coli protein isoform q

    Status: REVIEWED

    Source sequence(s)
    AC008575, AC136500
  26. NM_001407456.1NP_001394385.1  adenomatous polyposis coli protein isoform q

    Status: REVIEWED

    Source sequence(s)
    AC008575, AC136500
  27. NM_001407457.1NP_001394386.1  adenomatous polyposis coli protein isoform q

    Status: REVIEWED

    Source sequence(s)
    AC008575, AC136500
  28. NM_001407458.1NP_001394387.1  adenomatous polyposis coli protein isoform j

    Status: REVIEWED

    Source sequence(s)
    AC008575, AC136500
  29. NM_001407459.1NP_001394388.1  adenomatous polyposis coli protein isoform j

    Status: REVIEWED

    Source sequence(s)
    AC008575, AC136500
  30. NM_001407460.1NP_001394389.1  adenomatous polyposis coli protein isoform j

    Status: REVIEWED

    Source sequence(s)
    AC008575, AC136500
  31. NM_001407467.1NP_001394396.1  adenomatous polyposis coli protein isoform r

    Status: REVIEWED

    Source sequence(s)
    AC008575, AC136500
  32. NM_001407469.1NP_001394398.1  adenomatous polyposis coli protein isoform r

    Status: REVIEWED

    Source sequence(s)
    AC008575, AC136500
  33. NM_001407470.1NP_001394399.1  adenomatous polyposis coli protein isoform m

    Status: REVIEWED

    Source sequence(s)
    AC008575, AC136500
  34. NM_001407471.1NP_001394400.1  adenomatous polyposis coli protein isoform s

    Status: REVIEWED

    Source sequence(s)
    AC008575, AC136500
  35. NM_001407472.1NP_001394401.1  adenomatous polyposis coli protein isoform s

    Status: REVIEWED

    Source sequence(s)
    AC008575, AC136500

RNA

  1. NR_176365.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC008575, AC136500
    Related
    ENST00000505350.2
  2. NR_176366.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC008575, AC136500

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    112707498..112846239
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    113218062..113356772
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)