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HDAC3 histone deacetylase 3 [ Gallus gallus (chicken) ]

Gene ID: 395506, updated on 5-Mar-2024

Summary

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Symbol
HDAC3provided by CGNC
Full Name
histone deacetylase 3provided by CGNC
Primary source
CGNC:1896
See related
Ensembl:ENSGALG00010011478
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 13
Exon count:
15
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 13 NC_052544.1 (1546527..1560329, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 13 NC_052585.1 (1556640..1570441, complement)

Chromosome 13 - NC_052544.1Genomic Context describing neighboring genes Neighboring gene protocadherin gamma-A10-like Neighboring gene protocadherin gamma-A5-like Neighboring gene protocadherin gamma subfamily A, 2 Neighboring gene protocadherin gamma subfamily C, 3 Neighboring gene protocadherin gamma subfamily C, 5 Neighboring gene RELT like 2 Neighboring gene FCH and double SH3 domains 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Repression of the cardiac myosin light chain-2 gene in skeletal muscle requires site-specific association of antithetic regulator, Nished, and HDACs. Mathew S, et al. J Cell Mol Med, 2009 Aug. PMID 19604314, Free PMC Article
  2. N-terminal region, C-terminal region, nuclear export signal, and deacetylation activity of histone deacetylase-3 are essential for the viability of the DT40 chicken B cell line. Takami Y, et al. J Biol Chem, 2000 May 26. PMID 10748092
  3. WD repeats of the p48 subunit of chicken chromatin assembly factor-1 required for in vitro interaction with chicken histone deacetylase-2. Ahmad A, et al. J Biol Chem, 1999 Jun 4. PMID 10347232
  4. Class II histone deacetylases: versatile regulators. Verdin E, et al. Trends Genet, 2003 May. PMID 12711221
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone deacetylase 3
Names
HD3
protein deacetylase HDAC3
protein deacylase HDAC3
NP_990078.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_204747.2 → NP_990078.2  histone deacetylase 3

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000256
    UniProtKB/Swiss-Prot
    P56520
    Related
    ENSGALP00010015745.1, ENSGALT00010027499.1
    Conserved Domains (1) summary
    cd10005
    Location:3 → 383
    HDAC3; Histone deacetylase 3 (HDAC3)

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052544.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    1546527..1560329 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052585.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    1556640..1570441 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P56520.1 GenPept UniProtKB/Swiss-Prot:P56520

Gene LinkOut

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