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TCF20 transcription factor 20 [ Gallus gallus (chicken) ]

Gene ID: 417980, updated on 3-Apr-2024

Summary

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Symbol
TCF20provided by CGNC
Full Name
transcription factor 20provided by CGNC
Primary source
CGNC:9003
See related
Ensembl:ENSGALG00010010291
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (49315165..49430448)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (49612960..49728233)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121109327 Neighboring gene suppressor of cytokine signalling 1-like protein Neighboring gene microRNA 1581 Neighboring gene cytochrome P450 family 2 subfamily D member 6 Neighboring gene NADH:ubiquinone oxidoreductase subunit A6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor 20
Names
transcription factor 20 (AR1)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    49315165..49430448
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015289182.4 → XP_015144668.1  transcription factor 20 isoform X3

    UniProtKB/TrEMBL
    A0A1D5P5K6, A0A8V0Y4Q1
    Related
    ENSGALP00010013942.1, ENSGALT00010024573.1
    Conserved Domains (1) summary
    cd15699
    Location:1686 → 1913
    ePHD_TCF20; Extended PHD finger (ePHD) found in transcription factor 20 (TCF-20)

  2. XM_046907299.1 → XP_046763255.1  transcription factor 20 isoform X1

    UniProtKB/TrEMBL
    E1BXI6
    Related
    ENSGALP00010013943.1, ENSGALT00010024576.1

  3. XM_004937691.5 → XP_004937748.1  transcription factor 20 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y4Q1, A0A8V0YDA2
    Related
    ENSGALP00010013937.1, ENSGALT00010024562.1
    Conserved Domains (1) summary
    cd15699
    Location:1686 → 1913
    ePHD_TCF20; Extended PHD finger (ePHD) found in transcription factor 20 (TCF-20)

  4. XM_015289183.4 → XP_015144669.1  transcription factor 20 isoform X4

    Conserved Domains (1) summary
    cd15699
    Location:805 → 1032
    ePHD_TCF20; Extended PHD finger (ePHD) found in transcription factor 20 (TCF-20)

  5. XM_046907304.1 → XP_046763260.1  transcription factor 20 isoform X1

    UniProtKB/TrEMBL
    E1BXI6

  6. XM_004937689.5 → XP_004937746.1  transcription factor 20 isoform X1

    See identical proteins and their annotated locations for XP_004937746.1

    UniProtKB/TrEMBL
    A0A8V0Y4Q1, E1BXI6
    Conserved Domains (1) summary
    cd15699
    Location:1686 → 1913
    ePHD_TCF20; Extended PHD finger (ePHD) found in transcription factor 20 (TCF-20)

  7. XM_004937690.5 → XP_004937747.1  transcription factor 20 isoform X1

    See identical proteins and their annotated locations for XP_004937747.1

    UniProtKB/TrEMBL
    A0A8V0Y4Q1, E1BXI6
    Conserved Domains (1) summary
    cd15699
    Location:1686 → 1913
    ePHD_TCF20; Extended PHD finger (ePHD) found in transcription factor 20 (TCF-20)

  8. XM_046907333.1 → XP_046763289.1  transcription factor 20 isoform X1

    UniProtKB/TrEMBL
    E1BXI6

  9. XM_046907330.1 → XP_046763286.1  transcription factor 20 isoform X1

    UniProtKB/TrEMBL
    E1BXI6

  10. XM_046907322.1 → XP_046763278.1  transcription factor 20 isoform X1

    UniProtKB/TrEMBL
    E1BXI6

  11. XM_040668649.2 → XP_040524583.1  transcription factor 20 isoform X4

    Conserved Domains (1) summary
    cd15699
    Location:805 → 1032
    ePHD_TCF20; Extended PHD finger (ePHD) found in transcription factor 20 (TCF-20)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    49612960..49728233
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040660529.2 → XP_040516463.1  transcription factor 20 isoform X3

    UniProtKB/TrEMBL
    A0A8V0Y4Q1
    Conserved Domains (1) summary
    cd15699
    Location:1688 → 1915
    ePHD_TCF20; Extended PHD finger (ePHD) found in transcription factor 20 (TCF-20)

  2. XM_046910102.1 → XP_046766058.1  transcription factor 20 isoform X1

  3. XM_040660528.2 → XP_040516462.1  transcription factor 20 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y4Q1
    Conserved Domains (1) summary
    cd15699
    Location:1688 → 1915
    ePHD_TCF20; Extended PHD finger (ePHD) found in transcription factor 20 (TCF-20)

  4. XM_040660530.2 → XP_040516464.1  transcription factor 20 isoform X4

    Conserved Domains (1) summary
    cd15699
    Location:807 → 1034
    ePHD_TCF20; Extended PHD finger (ePHD) found in transcription factor 20 (TCF-20)

  5. XM_046910103.1 → XP_046766059.1  transcription factor 20 isoform X1

  6. XM_040660526.2 → XP_040516460.1  transcription factor 20 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y4Q1
    Conserved Domains (1) summary
    cd15699
    Location:1688 → 1915
    ePHD_TCF20; Extended PHD finger (ePHD) found in transcription factor 20 (TCF-20)

  7. XM_040660527.2 → XP_040516461.1  transcription factor 20 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y4Q1
    Conserved Domains (1) summary
    cd15699
    Location:1688 → 1915
    ePHD_TCF20; Extended PHD finger (ePHD) found in transcription factor 20 (TCF-20)

  8. XM_046910104.1 → XP_046766060.1  transcription factor 20 isoform X1

  9. XM_040660531.2 → XP_040516465.1  transcription factor 20 isoform X4

    Conserved Domains (1) summary
    cd15699
    Location:807 → 1034
    ePHD_TCF20; Extended PHD finger (ePHD) found in transcription factor 20 (TCF-20)
Nucleotide Protein Strain
Heading Accession and Version

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