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ATF1 activating transcription factor 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 452429, updated on 29-Mar-2024

Summary

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Official Symbol
ATF1provided by VGNC
Official Full Name
activating transcription factor 1provided by VGNC
Primary source
VGNC:VGNC:12788
Locus tag
CK820_G0039660
See related
Ensembl:ENSPTRG00000004941
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 12
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 10 NC_072408.2 (45044701..45103211, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 12 NC_072410.1 (43729174..43787980, complement)

Chromosome 10 - NC_072408.2Genomic Context describing neighboring genes Neighboring gene syncytin-1-like Neighboring gene transmembrane serine protease 12 Neighboring gene disco interacting protein 2 homolog B Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ATF4-CREB1 transcription factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclic AMP-dependent transcription factor ATF-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072408.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    45044701..45103211 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016923408.4 → XP_016778897.1  cyclic AMP-dependent transcription factor ATF-1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8KDZ4, A0A6D2Y8Z8, H2Q5X1
    Conserved Domains (2) summary
    cd14690
    Location:214 → 268
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:48 → 82
    pKID; pKID domain

  2. XM_001152537.7 → XP_001152537.1  cyclic AMP-dependent transcription factor ATF-1 isoform X2

    See identical proteins and their annotated locations for XP_001152537.1

    UniProtKB/TrEMBL
    A0A2J8KDZ4, A0A6D2Y8Z8, H2Q5X1
    Related
    ENSPTRP00000008439.4
    Conserved Domains (2) summary
    cd14690
    Location:214 → 268
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:48 → 82
    pKID; pKID domain

  3. XM_016923411.4 → XP_016778900.1  cyclic AMP-dependent transcription factor ATF-1 isoform X3

    Conserved Domains (1) summary
    cd14690
    Location:121 → 175
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain

  4. XM_016923409.4 → XP_016778898.1  cyclic AMP-dependent transcription factor ATF-1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8KDZ4, A0A6D2Y8Z8, H2Q5X1
    Conserved Domains (2) summary
    cd14690
    Location:214 → 268
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:48 → 82
    pKID; pKID domain

  5. XM_063786667.1 → XP_063642737.1  cyclic AMP-dependent transcription factor ATF-1 isoform X3

  6. XM_054664236.2 → XP_054520211.1  cyclic AMP-dependent transcription factor ATF-1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8KDZ4, A0A6D2Y8Z8, H2Q5X1

  7. XM_054664237.2 → XP_054520212.1  cyclic AMP-dependent transcription factor ATF-1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8KDZ4, A0A6D2Y8Z8, H2Q5X1

  8. XM_016923407.4 → XP_016778896.1  cyclic AMP-dependent transcription factor ATF-1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8KDZ4, A0A6D2Y8Z8, H2Q5X1
    Conserved Domains (2) summary
    cd14690
    Location:214 → 268
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:48 → 82
    pKID; pKID domain

  9. XM_063786666.1 → XP_063642736.1  cyclic AMP-dependent transcription factor ATF-1 isoform X3

  10. XM_063786668.1 → XP_063642738.1  cyclic AMP-dependent transcription factor ATF-1 isoform X3

  11. XM_054664238.2 → XP_054520213.1  cyclic AMP-dependent transcription factor ATF-1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8KDZ4, A0A6D2Y8Z8, H2Q5X1

  12. XM_054664235.2 → XP_054520210.2  cyclic AMP-dependent transcription factor ATF-1 isoform X1

Nucleotide Protein
Heading Accession and Version

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