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TGFB1I1 transforming growth factor beta 1 induced transcript 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 467962, updated on 29-Mar-2024

Summary

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Official Symbol
TGFB1I1provided by VGNC
Official Full Name
transforming growth factor beta 1 induced transcript 1provided by VGNC
Primary source
VGNC:VGNC:5933
Locus tag
CK820_G0050601
See related
Ensembl:ENSPTRG00000008048
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 16
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 18 NC_072416.2 (35500622..35507723)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 16 NC_072414.1 (35501625..35507619)

Chromosome 18 - NC_072416.2Genomic Context describing neighboring genes Neighboring gene zinc finger protein 843 Neighboring gene armadillo repeat containing 5 Neighboring gene solute carrier family 5 member 2 Neighboring gene RUS family member 1 Neighboring gene alpha hemoglobin stabilizing protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
transforming growth factor beta-1-induced transcript 1 protein
Names
androgen receptor coactivator ARA55

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072416.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    35500622..35507723
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001159480.7 → XP_001159480.1  transforming growth factor beta-1-induced transcript 1 protein isoform X1

    See identical proteins and their annotated locations for XP_001159480.1

    UniProtKB/TrEMBL
    A0A2I3SRD0, A0A2J8J582, A0A6D2WSI4, H2R4E5
    Related
    ENSPTRP00000047049.5
    Conserved Domains (5) summary
    cd09337
    Location:287 → 338
    LIM2_Paxillin_like; The second LIM domain of the paxillin like protein family
    cd09409
    Location:346 → 398
    LIM3_Paxillin; The third LIM domain of paxillin
    cd09412
    Location:405 → 456
    LIM4_Leupaxin; The fourth LIM domain of Leupaxin
    cd09336
    Location:228 → 280
    LIM1_Paxillin_like; The first LIM domain of the paxillin like protein family
    pfam03535
    Location:86 → 106
    Paxillin; Paxillin family

  2. XM_009430695.4 → XP_009428970.1  transforming growth factor beta-1-induced transcript 1 protein isoform X2

    See identical proteins and their annotated locations for XP_009428970.1

    UniProtKB/TrEMBL
    A0A2I3SRD0, A0A2J8J576
    Conserved Domains (5) summary
    cd09337
    Location:270 → 321
    LIM2_Paxillin_like; The second LIM domain of the paxillin like protein family
    cd09409
    Location:329 → 381
    LIM3_Paxillin; The third LIM domain of paxillin
    cd09412
    Location:388 → 439
    LIM4_Leupaxin; The fourth LIM domain of Leupaxin
    cd09336
    Location:211 → 263
    LIM1_Paxillin_like; The first LIM domain of the paxillin like protein family
    pfam03535
    Location:69 → 89
    Paxillin; Paxillin family
Nucleotide Protein
Heading Accession and Version

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