scly selenocysteine lyase [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: sclyprovided by ZNC
Official Full Name: selenocysteine lyaseprovided by ZNC
Primary source: ZFIN:ZDB-GENE-080204-30
See related: Ensembl:ENSDARG00000073813 AllianceGenome:ZFIN:ZDB-GENE-080204-30
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:171514
Summary: Predicted to enable catalytic activity. Orthologous to human SCLY (selenocysteine lyase). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 6

Exon count:: 13

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	6	NC_007117.7 (27275698..27292921)
105	previous assembly	GRCz10 (GCF_000002035.5)	6	NC_007117.6 (27285144..27300297)

Chromosome 6 - NC_007117.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables lyase activity	IEA Inferred from Electronic Annotation more info
enables selenocysteine lyase activity	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info
located_in cytosol	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: selenocysteine lyase

NP_001103853.1

EC 4.4.1.16

XP_021332563.1

EC 4.4.1.16

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001110383.1 → NP_001103853.1 selenocysteine lyase

See identical proteins and their annotated locations for NP_001103853.1

Status: PROVISIONAL

Source sequence(s)

BC154449

UniProtKB/TrEMBL

A0A8M1NEN6, A8WFT4

Related

ENSDARP00000099679.1, ENSDART00000114347.3

Conserved Domains (1) summary

COG1104
Location:36 → 449

NifS; Cysteine sulfinate desulfinase/cysteine desulfurase or related enzyme [Amino acid transport and metabolism]

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007117.7 Reference GRCz11 Primary Assembly

Range

27275698..27292921

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021476888.1 → XP_021332563.1 selenocysteine lyase isoform X1

UniProtKB/TrEMBL

A0A8M1NEN6, A8WFT4

Conserved Domains (1) summary

COG1104
Location:36 → 449

NifS; Cysteine sulfinate desulfinase/cysteine desulfurase or related enzyme [Amino acid transport and metabolism]