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UBC ubiquitin C [ Canis lupus familiaris (dog) ]

Gene ID: 610457, updated on 5-Mar-2024

Summary

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Gene symbol
UBC
Gene description
ubiquitin C
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 26
Exon count:
2
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 26 NC_051830.1 (5251876..5254989)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 26 NC_006608.4 (5165853..5168506)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 26 NC_049247.1 (5230046..5233383)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 26 NC_049286.1 (5186495..5189830)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 26 NC_049767.1 (5278119..5281494)

Chromosome 26 - NC_051830.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106557839 Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene transfer RNA alanine (anticodon UGC) Neighboring gene U6atac minor spliceosomal RNA Neighboring gene transcription and mRNA export factor ENY2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Counteracting vasopressin-mediated water reabsorption by ATP, dopamine, and phorbol esters: mechanisms of action. Boone M, et al. Am J Physiol Renal Physiol, 2011 Mar. PMID 21209006
  2. Short-chain ubiquitination mediates the regulated endocytosis of the aquaporin-2 water channel. Kamsteeg EJ, et al. Proc Natl Acad Sci U S A, 2006 Nov 28. PMID 17101973, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein tag activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in modification-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polyubiquitin-C; LOW QUALITY PROTEIN: polyubiquitin-C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051830.1 Reference ROS_Cfam_1.0

    Range
    5251876..5254989
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038436353.1 → XP_038292281.1  LOW QUALITY PROTEIN: polyubiquitin-C

    UniProtKB/TrEMBL
    A0A8C0P4P5
    Conserved Domains (1) summary
    cd01803
    Location:77 → 152
    Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049286.1 Alternate UMICH_Zoey_3.1

    Range
    5186495..5189830
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038511274.1 → XP_038367202.1  polyubiquitin-C

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049767.1 Alternate UNSW_CanFamBas_1.0

    Range
    5278119..5281494
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038638944.1 → XP_038494872.1  LOW QUALITY PROTEIN: polyubiquitin-C

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049247.1 Alternate UU_Cfam_GSD_1.0

    Range
    5230046..5233383
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038574749.1 → XP_038430677.1  polyubiquitin-C

    UniProtKB/TrEMBL
    A0A8C0TKY2

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006608.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    5165853..5168506
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_847967.6 → XP_853060.2  polyubiquitin-C

    Conserved Domains (1) summary
    cd01803
    Location:77 → 152
    Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin
Nucleotide Protein
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