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A330069K06Rik RIKEN cDNA A330069K06 gene [ Mus musculus (house mouse) ]

Gene ID: 213544, updated on 8-Feb-2024

Summary

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Official Symbol
A330069K06Rikprovided by MGI
Official Full Name
RIKEN cDNA A330069K06 geneprovided by MGI
Primary source
MGI:MGI:2685464
See related
AllianceGenome:MGI:2685464
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm618
Expression
Low expression observed in reference dataset See more
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Genomic context

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See A330069K06Rik in Genome Data Viewer
Location:
3; 3 E3
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (79967179..80120414)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E3438 Neighboring gene transmembrane protein 144 Neighboring gene STARR-seq mESC enhancer starr_08010 Neighboring gene STARR-seq mESC enhancer starr_08011 Neighboring gene predicted gene, 26420 Neighboring gene STARR-seq mESC enhancer starr_08012 Neighboring gene STARR-seq mESC enhancer starr_08013 Neighboring gene golgi associated kinase 1B Neighboring gene VISTA enhancer mm1052 Neighboring gene STARR-seq mESC enhancer starr_08014 Neighboring gene STARR-seq mESC enhancer starr_08015 Neighboring gene STARR-seq mESC enhancer starr_08016 Neighboring gene STARR-seq mESC enhancer starr_08017 Neighboring gene eukaryotic translation initiation factor 3, subunit M pseudogene Neighboring gene STARR-seq mESC enhancer starr_08018 Neighboring gene predicted gene, 57716 Neighboring gene glutamate receptor, ionotropic, AMPA2 (alpha 2)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000069.7 Chromosome 3 Reference GRCm39 C57BL/6J

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    79967179..80120414
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_004941587.1 RNA Sequence

  2. XR_004941591.1 RNA Sequence

  3. XR_004941588.1 RNA Sequence

  4. XR_004941592.1 RNA Sequence

  5. XR_004941593.1 RNA Sequence

  6. XR_004941590.1 RNA Sequence

  7. XR_004941589.1 RNA Sequence

  8. XR_004941594.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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