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Lcn3 lipocalin 3 [ Rattus norvegicus (Norway rat) ]

Gene ID: 502611, updated on 4-Jan-2025

Summary

Symbol
Lcn3provided by RGD
Full Name
lipocalin 3provided by RGD
Primary source
RGD:1562745
See related
EnsemblRapid:ENSRNOG00000074882 AllianceGenome:RGD:1562745
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1562745
Summary
Predicted to enable small molecule binding activity. Predicted to be active in extracellular space. [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Heart (RPKM 1.8), Testes (RPKM 0.6) and 2 other tissues See more
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Genomic context

See Lcn3 in Genome Data Viewer
Location:
3p13
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (28937851..28941097, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (8539260..8542792, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (2945312..2947318, complement)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 4E, pseudogene 5 Neighboring gene progestagen associated endometrial protein like 1 Neighboring gene progestagen associated endometrial protein Neighboring gene von Ebner gland protein 1-like Neighboring gene odorant binding protein 2B like 1 Neighboring gene odorant binding protein 2B Neighboring gene parkin RBR E3 ubiquitin protein ligase like 1

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Gene Ontology Provided by RGD

Component Evidence Code Pubs
is_active_in extracellular space  

General protein information

Preferred Names
lipocalin 3; vomeronasal secretory protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001430809.1NP_001417738.1  lipocalin 3 precursor

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000003
    UniProtKB/TrEMBL
    A6JTA6

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    28937851..28941097 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063284814.1XP_063140884.1  vomeronasal secretory protein 1

    Related
    ENSRNOP00000108541.1, ENSRNOT00000131655.1
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