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4930402F06Rikl RIKEN cDNA 4930402F06 gene like [ Rattus norvegicus (Norway rat) ]

Gene ID: 502618, updated on 4-Jan-2025

Summary

Official Symbol
4930402F06Riklprovided by RGD
Official Full Name
RIKEN cDNA 4930402F06 gene likeprovided by RGD
Primary source
RGD:1560029
See related
EnsemblRapid:ENSRNOG00000039210 AllianceGenome:RGD:1560029
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable glycosyltransferase activity. Predicted to be involved in lipid glycosylation. Predicted to be located in membrane. Predicted to be active in Golgi apparatus and vesicle. [provided by Alliance of Genome Resources, Jan 2025]
Expression
Restricted expression toward (RPKM 24.1) See more
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Genomic context

See 4930402F06Rikl in Genome Data Viewer
Location:
3p11
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (39110670..39126943, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (18711447..18729464, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (14592985..14614011, complement)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102548933 Neighboring gene glycoprotein, alpha-galactosyltransferase 1-like 1 Neighboring gene spermidine synthase-like Neighboring gene glycoprotein alpha-galactosyltransferase 1 Neighboring gene uncharacterized LOC120101529 Neighboring gene uncharacterized LOC120101530

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables glycosyltransferase activity  
enables hexosyltransferase activity  
enables metal ion binding  
Process Evidence Code Pubs
involved_in carbohydrate metabolic process  
involved_in lipid glycosylation  
Component Evidence Code Pubs
is_active_in Golgi apparatus  
located_in membrane  
is_active_in vesicle  

General protein information

Preferred Names
uncharacterized protein LOC502618
Names
ABO-family member 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001037366.2NP_001032443.2  uncharacterized protein LOC502618 precursor

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000003
    UniProtKB/TrEMBL
    A6JUF3, E9PTA3
    Related
    ENSRNOP00000056762.1, ENSRNOT00000060011.4

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    39110670..39126943 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063284399.1XP_063140469.1  uncharacterized protein LOC502618 isoform X1

    UniProtKB/TrEMBL
    A6JUF3, E9PTA3
  2. XM_017591995.3XP_017447484.1  uncharacterized protein LOC502618 isoform X1

    UniProtKB/TrEMBL
    A6JUF3, E9PTA3
    Conserved Domains (1) summary
    cl11394
    Location:45329
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
  3. XM_008761772.4XP_008759994.1  uncharacterized protein LOC502618 isoform X2

    UniProtKB/TrEMBL
    A0A8I6AMF5
    Conserved Domains (1) summary
    cl11394
    Location:8275
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
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