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Gpd1l3 glycerol-3-phosphate dehydrogenase 1 like 3 [ Rattus norvegicus (Norway rat) ]

Gene ID: 502711, updated on 2-May-2024

Summary

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Official Symbol
Gpd1l3provided by RGD
Official Full Name
glycerol-3-phosphate dehydrogenase 1 like 3provided by RGD
Primary source
RGD:1561560
See related
Ensembl:ENSRNOG00000025214 AllianceGenome:RGD:1561560
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1561560
Expression
Restricted expression toward (RPKM 124.9) See more
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Genomic context

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See Gpd1l3 in Genome Data Viewer
Location:
4q11
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (11416229..11419524, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (10523777..10527072, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (7051780..7055113, complement)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene WD repeat domain 86 Neighboring gene negative regulator of ubiquitin-like proteins 1 Neighboring gene uncharacterized LOC134486541 Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 Neighboring gene chondroitin polymerizing factor 2 Neighboring gene microRNA 671

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables NAD binding IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein homodimerization activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in glycerol-3-phosphate catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of glycerol-3-phosphate dehydrogenase (FAD) complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
similar to Gpd1l protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001346361.1 → NP_001333290.1  similar to Gpd1l protein isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    JAXUCZ010000004
    UniProtKB/TrEMBL
    A0A8I6ALX9, A6K532
    Related
    ENSRNOP00000095672.1, ENSRNOT00000032728.7

  2. NM_001346362.1 → NP_001333291.1  similar to Gpd1l protein isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding regin, and initiates translation at a downstream start site compared to variant 1. The encoded isoform (2) has a shorter N-terminus than isoform 1.
    Source sequence(s)
    JAXUCZ010000004
    Conserved Domains (1) summary
    TIGR03376
    Location:1 → 305
    glycerol3P_DH; glycerol-3-phosphate dehydrogenase (NAD(+))

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    11416229..11419524 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039108237.1 → XP_038964165.1  similar to Gpd1l protein isoform X1

    Conserved Domains (1) summary
    TIGR03376
    Location:1 → 305
    glycerol3P_DH; glycerol-3-phosphate dehydrogenase (NAD(+))
Nucleotide Protein Strain
Heading Accession and Version

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