Crystallization and characterization of Smaug: a novel RNA-binding motif

Biochem Biophys Res Commun. 2002 Oct 11;297(5):1085-8. doi: 10.1016/s0006-291x(02)02327-6.

Abstract

During Drosophila embryogenesis, Smaug protein represses translation of Nanos through an interaction with a specific element in its 3(')UTR. The repression occurs in the bulk cytoplasm of the embryo; Nanos is, however, successfully translated in the specialized cytoplasm of the posterior pole. This generates a gradient of Nanos emanating from the posterior pole that is essential for organizing proper abdominal segmentation. To understand the structural basis of RNA binding and translational control, we have crystallized a domain of Drosophila Smaug that binds RNA. The crystals belong to the space group R3 with unit cell dimensions of a=b=129.3A, c=33.1A, alpha=beta=90 degrees, gamma=120 degrees and diffract to 1.80A with synchrotron radiation. Initial characterization of this domain suggests that it encodes a novel RNA-binding motif.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • 3' Untranslated Regions
  • Amino Acid Motifs
  • Animals
  • Circular Dichroism
  • Crystallography, X-Ray
  • Drosophila Proteins / chemistry*
  • Drosophila Proteins / metabolism*
  • Drosophila melanogaster
  • Gene Deletion
  • Magnetic Resonance Spectroscopy
  • Protein Binding
  • Protein Structure, Secondary
  • Protein Structure, Tertiary
  • RNA / metabolism*
  • RNA-Binding Proteins / chemistry*
  • RNA-Binding Proteins / metabolism*
  • Repressor Proteins / chemistry*
  • Repressor Proteins / metabolism*

Substances

  • 3' Untranslated Regions
  • Drosophila Proteins
  • RNA-Binding Proteins
  • Repressor Proteins
  • smg protein, Drosophila
  • RNA