Genetic analyses uncover pleiotropic compensatory roles for Drosophila Nucleobindin-1 in inositol trisphosphate-mediated intracellular calcium homeostasis

Genome. 2020 Feb;63(2):61-90. doi: 10.1139/gen-2019-0113. Epub 2019 Sep 26.

Abstract

Nucleobindin-1 is an EF-hand calcium-binding protein with a distinctive profile, predominantly localized to the Golgi in insect and wide-ranging vertebrate cell types, alike. Its putative involvements in intracellular calcium (Ca2+) homeostasis have never been phenotypically characterized in any model organism. We have analyzed an adult-viable mutant that completely disrupts the G protein α-subunit binding and activating (GBA) motif of Drosophila Nucleobindin-1 (dmNUCB1). Such disruption does not manifest any obvious fitness-related, morphological/developmental, or behavioral abnormalities. A single copy of this mutation or the knockdown of dmnucb1 in restricted sets of cells variously rescues pleiotropic mutant phenotypes arising from impaired inositol 1,4,5-trisphosphate receptor (IP3R) activity (in turn depleting cytoplasmic Ca2+ levels across diverse tissue types). Additionally, altered dmNUCB1 expression or function considerably reverses lifespan and mobility improvements effected by IP3R mutants, in a Drosophila model of amyotrophic lateral sclerosis. Homology modeling-based analyses further predict a high degree of conformational conservation in Drosophila, of biochemically validated structural determinants in the GBA motif that specify in vertebrates, the unconventional Ca2+-regulated interaction of NUCB1 with Gαi subunits. The broad implications of our findings are hypothetically discussed, regarding potential roles for NUCB1 in GBA-mediated, Golgi-associated Ca2+ signaling, in health and disease.

Keywords: Drosophila melanogaster; Golgi; IP3 receptor; Nucleobindin-1; homéostasie du calcium intracellulaire; intracellular calcium homeostasis; nucléobindine-1; récepteur IP3.

MeSH terms

  • Alleles
  • Amino Acid Motifs
  • Animals
  • Calcium / metabolism*
  • Calcium-Binding Proteins / chemistry
  • Calcium-Binding Proteins / genetics
  • Calcium-Binding Proteins / metabolism
  • Calcium-Binding Proteins / physiology*
  • DNA-Binding Proteins / genetics
  • DNA-Binding Proteins / metabolism
  • Drosophila Proteins / chemistry
  • Drosophila Proteins / genetics
  • Drosophila Proteins / metabolism
  • Drosophila Proteins / physiology*
  • Drosophila melanogaster / genetics
  • Drosophila melanogaster / growth & development
  • Drosophila melanogaster / metabolism
  • GTP-Binding Protein alpha Subunits / metabolism
  • Genes, Lethal
  • Genetic Pleiotropy
  • Golgi Apparatus / metabolism
  • Homeostasis
  • Humans
  • Inositol 1,4,5-Trisphosphate / metabolism
  • Inositol 1,4,5-Trisphosphate Receptors / genetics*
  • Mutation
  • Nucleobindins / chemistry
  • Nucleobindins / genetics
  • Nucleobindins / metabolism
  • Nucleobindins / physiology*
  • Protein Domains
  • Structural Homology, Protein

Substances

  • Calcium-Binding Proteins
  • DNA-Binding Proteins
  • Drosophila Proteins
  • GTP-Binding Protein alpha Subunits
  • Inositol 1,4,5-Trisphosphate Receptors
  • NUCB1 protein, Drosophila
  • NUCB1 protein, human
  • Nucleobindins
  • TARDBP protein, human
  • Inositol 1,4,5-Trisphosphate
  • Calcium