Cryo-EM structures of human ZnT8 in both outward- and inward-facing conformations

Elife. 2020 Jul 29:9:e58823. doi: 10.7554/eLife.58823.

Abstract

ZnT8 is a Zn2+/H+ antiporter that belongs to SLC30 family and plays an essential role in regulating Zn2+ accumulation in the insulin secretory granules of pancreatic β cells. However, the Zn2+/H+ exchange mechanism of ZnT8 remains unclear due to the lack of high-resolution structures. Here, we report the cryo-EM structures of human ZnT8 (HsZnT8) in both outward- and inward-facing conformations. HsZnT8 forms a dimeric structure with four Zn2+ binding sites within each subunit: a highly conserved primary site in transmembrane domain (TMD) housing the Zn2+ substrate; an interfacial site between TMD and C-terminal domain (CTD) that modulates the Zn2+ transport activity of HsZnT8; and two adjacent sites buried in the cytosolic domain and chelated by conserved residues from CTD and the His-Cys-His (HCH) motif from the N-terminal segment of the neighboring subunit. A comparison of the outward- and inward-facing structures reveals that the TMD of each HsZnT8 subunit undergoes a large structural rearrangement, allowing for alternating access to the primary Zn2+ site during the transport cycle. Collectively, our studies provide the structural insights into the Zn2+/H+ exchange mechanism of HsZnT8.

Keywords: ZnT8; cryo-EM; human; insulin secretory granules; molecular biophysics; structural biology; zinc transporter.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Antiporters / metabolism
  • Binding Sites
  • Cryoelectron Microscopy
  • HEK293 Cells
  • Humans
  • Models, Molecular
  • Protein Conformation
  • Protein Domains
  • Sequence Alignment
  • Zinc / metabolism
  • Zinc Transporter 8 / metabolism
  • Zinc Transporter 8 / ultrastructure*

Substances

  • Antiporters
  • SLC30A8 protein, human
  • Zinc Transporter 8
  • Zinc