Banf1-ps5 (BAF nuclear assembly factor 1, pseudogene 5) - Rat Genome Database

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Gene: Banf1-ps5 (BAF nuclear assembly factor 1, pseudogene 5) Rattus norvegicus
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Symbol: Banf1-ps5
Name: BAF nuclear assembly factor 1, pseudogene 5
RGD ID: 7499841
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: barrier-to-autointegration factor-like; LOC102547803; LOC685851; similar to barrier to autointegration factor 1
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87113,951,573 - 113,952,112 (+)NCBIGRCr8
mRatBN7.27112,070,981 - 112,072,251 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.07121,745,663 - 121,746,396 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.07121,735,867 - 121,736,501 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47118,810,619 - 118,810,888 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7108,397,209 - 108,397,942 (+)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



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Reference Title
Reference Citation
1. GOA pipeline RGD automated data pipeline


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Variants in Banf1-ps5
8 total Variants

1 to 10 of 35 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7111182207135012528Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)794811326116294265Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7103146217116738842Rat

1 to 10 of 35 rows





GenBank Nucleotide JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-32699 BioCyc
NCBI Gene LOC102547803 ENTREZGENE
PhenoGen Banf1-ps5 PhenoGen


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Banf1-ps5  BAF nuclear assembly factor 1, pseudogene 5  LOC102547803  barrier-to-autointegration factor-like  Symbol and Name Changed 1299863 APPROVED
2015-07-29 LOC102547803  barrier-to-autointegration factor-like  LOC685851  similar to barrier to autointegration factor 1  Data merged from RGD:1589035 737654 PROVISIONAL
2013-12-17 LOC102547803  barrier-to-autointegration factor-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC685851  similar to barrier to autointegration factor 1      Symbol and Name status set to provisional 70820 PROVISIONAL