Representative Gene
Model
Gene Model Type
protein_coding
Other names:
Description
Encodes a protein with a putative HMG-box domain. The high-mobility group (HMG) proteins are chromatin-associated proteins that act as architectural factors in various nucleoprotein structures, which regulate DNA-dependent processes such as transcription and recombination. Expression of this gene was not detected according to Grasser et al. (J. Mol. Biol. 2006:358, 654-664).
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Sequence
full length CDS
full length genomic
full length cDNA
protein
Associated Transcripts
type
number associated
EST
( 42 )
cDNA
( 5 )
BAR eFP Browser
Data Source
Chromosome
5
Protein Data
Plant Homologs
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Eudicotyledons
Brassica napus 1
Brassica rapa 2
Capsicum annuum 1
Citrus sinensis 1
Eucalyptus grandis 1
Gossypium hirsutum 2
Helianthus annuus 1
Juglans regia 1
Lactuca sativa 1
Manihot esculenta 1
Medicago truncatula 1
Nicotiana tabacum 2
Populus trichocarpa 2
Prunus persica 1
Ricinus communis 1
Solanum lycopersicum 1
Solanum tuberosum 1
Spinacia oleracea 1
Theobroma cacao 1
Monocotyledons
Brachypodium distachyon 1
Hordeum vulgare 1
Musa acuminata 1
Oryza sativa 1
Setaria italica 1
Sorghum bicolor 1
Triticum aestivum 3
Zea mays 2
Zostera marina 1
Other plants
Amborella trichopoda 1
Klebsormidium nitens 1
Nelumbo nucifera 2
Physcomitrella patens 1
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Map Locations
chrom
map
map type
coordinates
orientation
attrib
5
AGI
nuc_sequence
1576982
- 1578768
bp
reverse
details
Map Links
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Polymorphism
Showing 15
of 26 entries (see all )
name
type
polymorphism site
gene names
allele type
GABI_791B03
insertion
coding_region
AT5G05330.3, AT5G05330.1
unknown
GABI_852C02
insertion
5'UTR
AT5G05330.2
unknown
GABI_852C02
insertion
coding_region
AT5G05330.3, AT5G05330.1
unknown
GK-322E12-015950
insertion
promoter
AT5G05330.3, AT5G05330.2, AT5G05330.1
unknown
GK-572A10-021191
insertion
promoter
AT5G05330.3, AT5G05330.2, AT5G05330.1
unknown
GK-572A10-021193
insertion
promoter
AT5G05330.3, AT5G05330.2, AT5G05330.1
unknown
GK-791B03-024937
insertion
exon
AT5G05330.3, AT5G05330.1
unknown
GK-791B03-024937
insertion
promoter
AT5G05330.2
unknown
GK-791B03-024967
insertion
exon
AT5G05330.3, AT5G05330.1
unknown
GK-791B03-024967
insertion
promoter
AT5G05330.2
unknown
GK-852C02-025757
insertion
exon
AT5G05330.3, AT5G05330.2, AT5G05330.1
unknown
GK-852C02-025844
insertion
exon
AT5G05330.3, AT5G05330.2, AT5G05330.1
unknown
SALK_119741.40.15.x
insertion
exon
AT5G05330.3, AT5G05330.2, AT5G05330.1
unknown
SALK_134540.44.40.x
insertion
exon
AT5G05330.3, AT5G05330.2, AT5G05330.1
unknown
SALKseq_065921.2
insertion
intron
AT5G05330.3, AT5G05330.2, AT5G05330.1
unknown
Germplasm
Showing 9
of 9 entries
Clones (showing 14 of 14 entries)
External Link
Publication
author/title
source
associated loci
date
Grasser, Marion, Lentz, Anne, Lichota, Jacek, Merkle, Thomas, Grasser, Klaus D
The Arabidopsis Genome Encodes Structurally and Functionally Diverse HMGB-type Proteins.
JOURNAL OF MOLECULAR BIOLOGY
AT3G28730
AT5G05330
2006
Grasser, K D,Grill, S,Duroux, M,Launholt, D,Thomsen, M S,Nielsen, B V,Nielsen, H K,Merkle, T
HMGB6 from Arabidopsis thaliana specifies a novel type of plant chromosomal HMGB protein.
BIOCHEMISTRY
AT1G20693
AT1G20696
AT1G76110
AT2G17560
AT2G34450
AT3G13350
AT3G28730
AT3G43530
AT4G11080
AT4G23800
AT5G05330
AT5G23405
AT5G23420
2004
Dal Bosco, C,Lezhneva, L,Biehl, A,Leister, D,Strotmann, H,Wanner, G,Meurer, J
Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.
JOURNAL OF BIOLOGICAL CHEMISTRY
AT1G01080
AT1G01090
AT1G01250
AT1G01290
AT1G01500
AT1G01520
AT1G01550
AT1G01690
AT1G01730
AT1G01860
AT1G01950
AT1G02020
AT1G02060
AT1G02070
AT1G02150
AT1G02170
AT1G02260
AT1G02560
AT1G02680
AT1G02730
more...
2003
Date last modified
2013-02-11
TAIR Accession
Locus:2153514