Oxhamre2005_Ca_oscillation

Model Identifier
BIOMD0000000047
Short description

The model should reproduce the figure 1C of the article (successfully reproduced in MathSBML). If your software does not support the variable "time", you can replace the assignmentRule:
n = n0 * [ exp(-kbN*time) + kappa * (1 - exp(-kbN*time))]
by
n = n0 * kappa


To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication for more information.

In summary, you are entitled to use this encoded model in absolutely any manner you deem suitable, verbatim, or with modification, alone or embedded it in a larger context, redistribute it, commercially or not, in a restricted way or not.


To cite BioModels Database, please use: Li C, Donizelli M, Rodriguez N, Dharuri H, Endler L, Chelliah V, Li L, He E, Henry A, Stefan MI, Snoep JL, Hucka M, Le Novère N, Laibe C (2010) BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models. BMC Syst Biol., 4:92.

Format
SBML (L2V1)
Related Publication
  • A minimal generic model of bacteria-induced intracellular Ca2+ oscillations in epithelial cells.
  • Camilla Oxhamre, Agneta Richter-Dahlfors, Vladimir P Zhdanov, Bengt Kasemo
  • Biophysical journal , 4/ 2005 , Volume 88 , Issue 4 , pages: 2976-2981 , PubMed ID: 15596518
Contributors
Submitter of the first revision: Harish Dharuri
Submitter of this revision: Lucian Smith
Curator: Lucian Smith
Modeller: Harish Dharuri

Metadata information

is (3 statements)
BioModels Database BIOMD0000000047
BioModels Database MODEL6623415355
KEGG Pathway Calcium signaling pathway - Rattus norvegicus (rat)

isDescribedBy (1 statement)
PubMed 15596518

isDerivedFrom (1 statement)
PubMed 11874447

hasTaxon (1 statement)
Taxonomy Rattus

isVersionOf (2 statements)
hasProperty (1 statement)
Mathematical Modelling Ontology Ordinary differential equation model


Curation status
Curated


Connected external resources