Chassagnole2001_Threonine Synthesis

Model Identifier
BIOMD0000000066
Short description

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SBML level 2 code generated for the JWS Online project by Jacky Snoep using PySCeS
Run this model online at http://jjj.biochem.sun.ac.za
To cite JWS Online please refer to: Olivier, B.G. and Snoep, J.L. (2004) Web-based modelling using JWS Online , Bioinformatics, 20:2143-2144

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Biomodels Curation: The model reproduces Fig 2f of the paper. The Vmax values for different reactions are obtained by multiplying the specific activites given in Table 3 of the paper with the protein concentration and an assay correction factor that was provided by the authors. The protein concentration is 202 mg/litre. The specific activities that need to be taken into consideration are those given for "variable threonine" in Table 3. The following are the assay correction factors provided by the authors: vak1=1.49; vak3=1.12; vasd=1.14; vhsd=1.42; vts=1.15; vhk=1.13. The model was successfully tested on MathSBML and Jarnac

Format
SBML (L2V1)
Related Publication
  • Control of the threonine-synthesis pathway in Escherichia coli: a theoretical and experimental approach.
  • C Chassagnole, D A Fell, B Raïs, B Kudla, J P Mazat
  • The Biochemical journal , 6/ 2001 , Volume 356 , Issue Pt 2 , pages: 433-444 , PubMed ID: 11368770
Contributors
Submitter of the first revision: Nicolas Le Novère
Submitter of this revision: Lucian Smith
Curator: Lucian Smith
Modeller: Nicolas Le Novère

Metadata information

is (2 statements)
BioModels Database BIOMD0000000066
BioModels Database MODEL6624131052

isDescribedBy (1 statement)
PubMed 11368770

hasTaxon (1 statement)
hasPart (2 statements)
isVersionOf (1 statement)
hasProperty (1 statement)
Mathematical Modelling Ontology Ordinary differential equation model

Curation status
Curated
Modelling approach(es)
ordinary differential equation model

Connected external resources