Neves2008 - Role of cell shape and size in controlling intracellular signalling

Model Identifier
BIOMD0000000182
Short description
Neves2008 - Role of cell shape and size in controlling intracellular signalling

The role of cell shape and size in the flow of spatial information from the cell surface receptor to downstream components within the cell has been studied on the β-adrenergic receptor to MAPK-signalling network.

This model is described in the article:

Neves SR, Tsokas P, Sarkar A, Grace EA, Rangamani P, Taubenfeld SM, Alberini CM, Schaff JC, Blitzer RD, Moraru II, Iyengar R
Cell. 2008, 133(4):666-680

Abstract:

The role of cell size and shape in controlling local intracellular signaling reactions, and how this spatial information originates and is propagated, is not well understood. We have used partial differential equations to model the flow of spatial information from the beta-adrenergic receptor to MAPK1,2 through the cAMP/PKA/B-Raf/MAPK1,2 network in neurons using real geometries. The numerical simulations indicated that cell shape controls the dynamics of local biochemical activity of signal-modulated negative regulators, such as phosphodiesterases and protein phosphatases within regulatory loops to determine the size of microdomains of activated signaling components. The model prediction that negative regulators control the flow of spatial information to downstream components was verified experimentally in rat hippocampal slices. These results suggest a mechanism by which cellular geometry, the presence of regulatory loops with negative regulators, and key reaction rates all together control spatial information transfer and microdomain characteristics within cells.

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Format
SBML (L2V3)
Related Publication
  • Cell shape and negative links in regulatory motifs together control spatial information flow in signaling networks.
  • Susana R Neves, Panayiotis Tsokas, Anamika Sarkar, Elizabeth A Grace, Padmini Rangamani, Stephen M Taubenfeld, Cristina M Alberini, James C Schaff, Robert D Blitzer, Ion I Moraru, Ravi Iyengar
  • Cell , 5/ 2008 , Volume 133 , Issue 4 , pages: 666-680 , PubMed ID: 18485874
Contributors
Submitter of the first revision: Harish Dharuri
Submitter of this revision: Lucian Smith
Curator: Lucian Smith
Modeller: Harish Dharuri

Metadata information

is (2 statements)
BioModels Database BIOMD0000000182
BioModels Database MODEL8609366518

isDescribedBy (1 statement)
PubMed 18485874

hasTaxon (1 statement)
hasPart (2 statements)
isVersionOf (1 statement)
Gene Ontology cell morphogenesis

isPartOf (1 statement)
hasProperty (1 statement)
Mathematical Modelling Ontology Ordinary differential equation model


Curation status
Curated


Connected external resources